RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	C14orf37	Q86TY3	774 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	IL17D	Q8TAD2	202 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	ZNF483	Q8TF39	744 aa	Predicted RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	CACTIN	Q8WUQ7	758 aa	Known RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	LARP4B	Q92615	738 aa	Known RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	CRBN	Q96SW2	442 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	AGAP2	Q99490	1192 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	ANP32E	Q9BTT0	268 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	HSPBP1	Q9NZL4	362 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	PCDHB4	Q9Y5E5	795 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	ZMYM4	Q5VZL5	1548 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	GPATCH8	Q9UKJ3	1502 aa	Known RBP	3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	SAMD9L	Q8IVG5	1584 aa		3.37	□□□□□ -1.87
SPG11-223	ENST00000560858	IQGAP1	P46940	1657 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	MAGI2	Q86UL8	1455 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	VIRMA	Q69YN4	1812 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	NOP56	O00567	594 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	MAFK	O60675	156 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	TADA3	O75528	432 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	KCNH1	O95259	989 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	HSPA5	P11021	654 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	COL6A1	P12109	1028 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	CR2	P20023	1033 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	DNAJA1	P31689	397 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	BCL6	P41182	706 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	ZC3H6	P61129	1189 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	CCDC142	Q17RM4	750 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	VASN	Q6EMK4	673 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858		Q6ZSN1	163 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	TRIM48	Q8IWZ4	208 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	REXO1L1P	Q8IX06	675 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	ULK2	Q8IYT8	1036 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	CYP26B1	Q9NR63	512 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	REXO2	Q9Y3B8	237 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	ZBED9	Q6R2W3	1325 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	DHX29	Q7Z478	1369 aa	Known RBP	3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	CHD1	O14646	1710 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	SPHKAP	Q2M3C7	1700 aa		3.36	□□□□□ -1.87
SPG11-223	ENST00000560858	PLB1	Q6P1J6	1458 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	PRDM15	P57071	1507 aa	Predicted RBP	3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	ANKRD34B	A5PLL1	514 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	DGKI	O75912	1065 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	BMP5	P22003	454 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	ACRV1	P26436	265 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	HIBADH	P31937	336 aa	Known RBP	3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	CSF2RB	P32927	897 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	USP10	Q14694	798 aa	Known RBP	3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	FNDC7	Q5VTL7	733 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	E4F1	Q66K89	784 aa	Predicted RBP	3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	MAMDC4	Q6UXC1	1216 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	GPR155	Q7Z3F1	870 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858		Q8N1Y9	231 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	PHOSPHO1	Q8TCT1	267 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	CARD11	Q9BXL7	1154 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	KATNBL1	Q9H079	304 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	BCL11A	Q9H165	835 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	SMOC1	Q9H4F8	434 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	PPT2	Q9UMR5	302 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	PCDHB10	Q9UN67	800 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	WASF3	Q9UPY6	502 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	EMC9	Q9Y3B6	208 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	SLC30A1	Q9Y6M5	507 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	FANCI	Q9NVI1	1328 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	CEP152	O94986	1710 aa		3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	SMG6	Q86US8	1419 aa	Known RBP	3.35	□□□□□ -1.87
SPG11-223	ENST00000560858	FAM135A	Q9P2D6	1515 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	TTC37	Q6PGP7	1564 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	DEPDC5	O75140	1603 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	MYOM1	P52179	1685 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	TMEM191C	A6NGB0	347 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858		H7BY64	318 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	CDC14B	O60729	498 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	KNG1	P01042	644 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	IL12RB1	P42701	662 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	HHEX	Q03014	270 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	EMC4	Q5J8M3	183 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	BVES	Q8NE79	360 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	DIO2	Q92813	273 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	CLIP3	Q96DZ5	547 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	CHAMP1	Q96JM3	812 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	MPHOSPH9	Q99550	1183 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	APBA2	Q99767	749 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	TTPAL	Q9BTX7	342 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	ZNF703	Q9H7S9	590 aa	Predicted RBP	3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	MYOT	Q9UBF9	498 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	OAZ3	Q9UMX2	235 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	KIF7	Q2M1P5	1343 aa		3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	ARID4B	Q4LE39	1312 aa	Predicted RBP	3.34	□□□□□ -1.87
SPG11-223	ENST00000560858	ROCK2	O75116	1388 aa	Known RBP	3.34	□□□□□ -1.88
SPG11-223	ENST00000560858	C9orf84	Q5VXU9	1444 aa		3.34	□□□□□ -1.88
SPG11-223	ENST00000560858	PRG4	Q92954	1404 aa	Predicted RBP	3.34	□□□□□ -1.88
SPG11-223	ENST00000560858	CCDC141	Q6ZP82	1450 aa		3.34	□□□□□ -1.88
SPG11-223	ENST00000560858	IFT172	Q9UG01	1749 aa		3.33	□□□□□ -1.88
SPG11-223	ENST00000560858	KIAA1210	Q9ULL0	1709 aa		3.33	□□□□□ -1.88
SPG11-223	ENST00000560858		H0Y858	1186 aa		3.33	□□□□□ -1.88
SPG11-223	ENST00000560858	KRIT1	O00522	736 aa		3.33	□□□□□ -1.88
SPG11-223	ENST00000560858	CKM	P06732	381 aa		3.33	□□□□□ -1.88
SPG11-223	ENST00000560858	RPS19	P39019	145 aa	Known RBP	3.33	□□□□□ -1.88
SPG11-223	ENST00000560858	MRPS21	P82921	87 aa	Known RBP	3.33	□□□□□ -1.88

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms