RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TANC1Q9C0D5 1861 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 FAM86C2PA6NEL3 165 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 BTBD18B2RXH4 712 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 CXCL10P02778 98 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 CKBP12277 381 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 EIF2AK2P19525 551 aaKnown RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 U2AF2P26368 475 aaKnown RBP eCLIP13.36□□□□□ -0.27
LDLR-212ENST00000560467 PSEN2P49810 448 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 RBL2Q08999 1139 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 SF3A1Q15459 793 aaKnown RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 FOXD4L6Q3SYB3 417 aaPredicted RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 FAM117BQ6P1L5 589 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 CNKSR3Q6P9H4 555 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 TRAF7Q6Q0C0 670 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 FOXD4L3Q6VB84 417 aaPredicted RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 KRT25Q7Z3Z0 450 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 REXO1Q8N1G1 1221 aaKnown RBP13.36□□□□□ -0.27
LDLR-212ENST00000560467 RMDN3Q96TC7 470 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 ZMYND12Q9H0C1 365 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 GTF2IRD1Q9UHL9 959 aa13.36□□□□□ -0.27
LDLR-212ENST00000560467 SORBS3O60504 671 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 GJB5O95377 273 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 BMP15O95972 392 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 FOSP01100 380 aaPredicted RBP13.35□□□□□ -0.27
LDLR-212ENST00000560467 ZNF200P98182 395 aaPredicted RBP13.35□□□□□ -0.27
LDLR-212ENST00000560467 RESTQ13127 1097 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 MBTPS1Q14703 1052 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 MFSD10Q14728 455 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 STXBP2Q15833 593 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 DGKDQ16760 1214 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 TRIM71Q2Q1W2 868 aaKnown RBP13.35□□□□□ -0.27
LDLR-212ENST00000560467 TMEM31Q5JXX7 168 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 SAMD3Q8N6K7 520 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 C7orf31Q8N865 590 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 DAGLBQ8NCG7 672 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 NAP1L4Q99733 375 aaKnown RBP13.35□□□□□ -0.27
LDLR-212ENST00000560467 SUGCTQ9HAC7 445 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 CD320Q9NPF0 282 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 RIC8AQ9NPQ8 531 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 C11orf16Q9NQ32 467 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 GJB4Q9NTQ9 266 aa13.35□□□□□ -0.27
LDLR-212ENST00000560467 DDX41Q9UJV9 622 aaKnown RBP13.35□□□□□ -0.27
LDLR-212ENST00000560467 LINC01553A4QN01 128 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 SPDYE3A6NKU9 549 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 F2P00734 622 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 TRAPPC10P48553 1259 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 ERVK-21P61565 698 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 HIC1Q14526 733 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 KIAA0753Q2KHM9 967 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 ARHGEF16Q5VV41 709 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 CLEC17AQ6ZS10 378 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 EMID1Q96A84 441 aaPredicted RBP13.34□□□□□ -0.27
LDLR-212ENST00000560467 SPATA32Q96LK8 384 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 TGS1Q96RS0 853 aaKnown RBP13.34□□□□□ -0.27
LDLR-212ENST00000560467 IWS1Q96ST2 819 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 RAD9AQ99638 391 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 MRVI1Q9Y6F6 885 aa13.34□□□□□ -0.27
LDLR-212ENST00000560467 COL4A4P53420 1690 aaPredicted RBP13.34□□□□□ -0.27
LDLR-212ENST00000560467 PIEZO1Q92508 2521 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 ABHD14A-ACY1A0A1B0GW23 586 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 GCOM1H8Y6P7 765 aaPredicted RBP13.33□□□□□ -0.28
LDLR-212ENST00000560467 HAS3O00219 553 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 OPLAHO14841 1288 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 NR3C2P08235 984 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 POLR2MP0CAP2 368 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 DNM1Q05193 864 aaKnown RBP13.33□□□□□ -0.28
LDLR-212ENST00000560467 PTK7Q13308 1070 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 STK38Q15208 465 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 NONOQ15233 471 aaKnown RBP eCLIP13.33□□□□□ -0.28
LDLR-212ENST00000560467 SLC35G1Q2M3R5 365 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 MYSM1Q5VVJ2 828 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.33□□□□□ -0.28
LDLR-212ENST00000560467 PPTC7Q8NI37 304 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 MAF1Q9H063 256 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 UBE2ZQ9H832 354 aaPredicted RBP13.33□□□□□ -0.28
LDLR-212ENST00000560467 PXMP2Q9NR77 195 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 MAP3K20Q9NYL2 800 aaKnown RBP13.33□□□□□ -0.28
LDLR-212ENST00000560467 LMCD1Q9NZU5 365 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 HCN4Q9Y3Q4 1203 aa13.33□□□□□ -0.28
LDLR-212ENST00000560467 EIF3JO75822 258 aaKnown RBP13.32□□□□□ -0.28
LDLR-212ENST00000560467 RGS20O76081 388 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 PARNO95453 639 aaKnown RBP13.32□□□□□ -0.28
LDLR-212ENST00000560467 CFBP00751 764 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 ATP2B1P20020 1258 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 HOXD11P31277 338 aaPredicted RBP13.32□□□□□ -0.28
LDLR-212ENST00000560467 MCM4P33991 863 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 AP3B2Q13367 1082 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 LAMC2Q13753 1193 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 IKBKEQ14164 716 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 SKOR2Q2VWA4 1001 aaPredicted RBP13.32□□□□□ -0.28
LDLR-212ENST00000560467 PIK3AP1Q6ZUJ8 805 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 IL31RAQ8NI17 732 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 KCNG4Q8TDN1 519 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 C17orf80Q9BSJ5 609 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 KATNAL1Q9BW62 490 aa13.32□□□□□ -0.28
LDLR-212ENST00000560467 TFIP11Q9UBB9 837 aaKnown RBP13.32□□□□□ -0.28
LDLR-212ENST00000560467 FIBPO43427 364 aa13.31□□□□□ -0.28
LDLR-212ENST00000560467 MARCH6O60337 910 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms