RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 DDX41Q9UJV9 622 aaKnown RBP12.53□□□□□ -0.4
USP3-218ENST00000560202 LRRC37A2A6NM11 1700 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 ARIH2O95376 493 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 EYA4O95677 639 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 SNAI1O95863 264 aaPredicted RBP12.52□□□□□ -0.4
USP3-218ENST00000560202 HOXC6P09630 235 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 BMP6P22004 513 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 ZNF165P49910 485 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 SLC12A3P55017 1021 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 ACTR2P61160 394 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 ASIC1P78348 528 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 HTRA3P83110 453 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 SP4Q02446 784 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 LY6KQ17RY6 165 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 CCDC62Q6P9F0 684 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 MSL3Q8N5Y2 521 aaKnown RBP12.52□□□□□ -0.4
USP3-218ENST00000560202 SYT2Q8N9I0 419 aaPredicted RBP12.52□□□□□ -0.4
USP3-218ENST00000560202 FAM200AQ8TCP9 573 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 PIGOQ8TEQ8 1089 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 SOCS4Q8WXH5 440 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 USP6NLQ92738 828 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 TINF2Q9BSI4 451 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 VTA1Q9NP79 307 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 PDGFCQ9NRA1 345 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 BMP2KQ9NSY1 1161 aaPredicted RBP12.52□□□□□ -0.4
USP3-218ENST00000560202 TELO2Q9Y4R8 837 aa12.52□□□□□ -0.4
USP3-218ENST00000560202 ZNF236Q9UL36 1845 aa12.52□□□□□ -0.41
USP3-218ENST00000560202 SYNGAP1Q96PV0 1343 aa12.52□□□□□ -0.41
USP3-218ENST00000560202 KLRC4O43908 158 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 FARP2O94887 1054 aaPredicted RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 LYPLA2O95372 231 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 GGPS1O95749 300 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 TBC1D8O95759 1140 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 PSAPP07602 524 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 CTGFP29279 349 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 PSMC5P62195 406 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 TTLL4Q14679 1199 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 KCNB1Q14721 858 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 TAPT1Q6NXT6 567 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 MIS18BP1Q6P0N0 1132 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 CNNM4Q6P4Q7 775 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 METTL7BQ6UX53 244 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 ABHD15Q6UXT9 468 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 GPBP1Q86WP2 473 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 SCFD2Q8WU76 684 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 DDX12PQ92771 950 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 KATNBL1Q9H079 304 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 NAT10Q9H0A0 1025 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 BHMT2Q9H2M3 363 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 CBX8Q9HC52 389 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 GJD2Q9UKL4 321 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 ZNFX1Q9P2E3 1918 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 RBM47A0AV96 593 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 ZBTB39O15060 712 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 ATG7O95352 703 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 TXNP10599 105 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 CYP11B2P19099 503 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 RGS2P41220 211 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 FCGRTP55899 365 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 LACTBP83111 547 aaPredicted RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 UGCGQ16739 394 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 KMT5BQ4FZB7 885 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 CELF3Q5SZQ8 465 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 DYMQ7RTS9 669 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 MTERF4Q7Z6M4 381 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 C4orf19Q8IY42 314 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 MLKLQ8NB16 471 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 CCDC47Q96A33 483 aaKnown RBP12.51□□□□□ -0.41
USP3-218ENST00000560202 CFHR5Q9BXR6 569 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 MLXIPQ9HAP2 919 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 RNF186Q9NXI6 227 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 GABBR1Q9UBS5 961 aa12.51□□□□□ -0.41
USP3-218ENST00000560202 PVALEFA0A1B0GWK0 134 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 DKC1O60832 514 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP3-218ENST00000560202 RHOBTB3O94955 611 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 SUPT20HL2P0C7V6 817 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 CYP2B6P20813 491 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 PSMC4P43686 418 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 ARSHQ5FYA8 562 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 ZNF658Q5TYW1 1059 aaPredicted RBP12.5□□□□□ -0.41
USP3-218ENST00000560202 SWSAP1Q6NVH7 229 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 UNC13DQ70J99 1090 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 DHX37Q8IY37 1157 aaKnown RBP12.5□□□□□ -0.41
USP3-218ENST00000560202 ATP6V0A1Q93050 837 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 DNAJC19Q96DA6 116 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 BPIFA3Q9BQP9 254 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 ABHD16BQ9H3Z7 469 aa12.5□□□□□ -0.41
USP3-218ENST00000560202 GSTTP1A0A1W2PQM5 241 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 TRPA1O75762 1119 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 KRT18P05783 430 aaKnown RBP12.49□□□□□ -0.41
USP3-218ENST00000560202 IDEP14735 1019 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 YWHABP31946 246 aaKnown RBP12.49□□□□□ -0.41
USP3-218ENST00000560202 SP3Q02447 781 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 ACVR2BQ13705 512 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 HS1BP3Q53T59 392 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 TMEM63BQ5T3F8 832 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 OLFML2BQ68BL8 750 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 LUZP1Q86V48 1076 aa12.49□□□□□ -0.41
USP3-218ENST00000560202 CCDC60Q8IWA6 550 aaPredicted RBP12.49□□□□□ -0.41
USP3-218ENST00000560202 SEPT1Q8WYJ6 367 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms