RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 DUSP10Q9Y6W6 482 aa11.19□□□□□ -0.62
TMEM260-211ENST00000556648 ASTN1O14525 1302 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ZNF541Q9H0D2 1346 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 DOCK1Q14185 1865 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ZSCAN20P17040 1043 aaPredicted RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 EIF4A3P38919 411 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 AMPD2Q01433 879 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 MTMR2Q13614 643 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 NBPF12Q5TAG4 269 aaPredicted RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 PDXDC1Q6P996 788 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 KIAA1328Q86T90 577 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 KSR1Q8IVT5 923 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 WNK4Q96J92 1243 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 TUFT1Q9NNX1 390 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 HDAC6Q9UBN7 1215 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ZMYM2Q9UBW7 1377 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 RPTORQ8N122 1335 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 PARP14Q460N5 1801 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 EIF3CLB5ME19 914 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 WDR46O15213 610 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 TBCAO75347 108 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 GCNT3O95395 438 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ALAS1P13196 640 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 NR2F2P24468 414 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 NMT1P30419 496 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 HNRNPH3P31942 346 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 CYLC1P35663 651 aaPredicted RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 TRAF1Q13077 416 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ADAM9Q13443 819 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 CCDC122Q5T0U0 273 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 C1orf186Q6ZWK4 172 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 BANK1Q8NDB2 785 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 NEK11Q8NG66 645 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 PURBQ96QR8 312 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 EIF3CQ99613 913 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 MXRA8Q9BRK3 442 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 NLRC4Q9NPP4 1024 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 DDX41Q9UJV9 622 aaKnown RBP11.18□□□□□ -0.62
TMEM260-211ENST00000556648 CDC23Q9UJX2 597 aa11.18□□□□□ -0.62
TMEM260-211ENST00000556648 ENC1O14682 589 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 ATP1A1P05023 1023 aaKnown RBP11.17□□□□□ -0.62
TMEM260-211ENST00000556648 VCAM1P19320 739 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 MARSP56192 900 aaKnown RBP11.17□□□□□ -0.62
TMEM260-211ENST00000556648 CDK17Q00537 523 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 KNOP1Q1ED39 458 aaKnown RBP11.17□□□□□ -0.62
TMEM260-211ENST00000556648 EDRF1Q3B7T1 1238 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 ZC2HC1CQ53FD0 456 aaPredicted RBP11.17□□□□□ -0.62
TMEM260-211ENST00000556648 B3GNT9Q6UX72 402 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 TEKT3Q9BXF9 490 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 WDR11Q9BZH6 1224 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 KIAA1683Q9H0B3 1180 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 HAUS4Q9H6D7 363 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 EHMT1Q9H9B1 1298 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 PLAGL2Q9UPG8 496 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.17□□□□□ -0.62
TMEM260-211ENST00000556648 STK24Q9Y6E0 443 aa11.17□□□□□ -0.62
TMEM260-211ENST00000556648 CLIC2O15247 247 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 TLR2O60603 784 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 FLOT1O75955 427 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SEC31AO94979 1220 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 ACTN1P12814 892 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CASP4P49662 377 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 KIF11P52732 1056 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 KRT83P78385 493 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 BMT2Q1RMZ1 405 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SRGAP1Q7Z6B7 1085 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CCDC170Q8IYT3 715 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 PRPF38AQ8NAV1 312 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 GOLGA1Q92805 767 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 MTFR1LQ9H019 292 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 DEFB129Q9H1M3 183 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 GANQ9H2C0 597 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 RPAP3Q9H6T3 665 aaPredicted RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 MLXIPQ9HAP2 919 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CNOT7Q9UIV1 285 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 TRAF3IP3Q9Y228 551 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 FRMPD4Q14CM0 1322 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 MACROD2A1Z1Q3 448 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 IPO5O00410 1097 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CETN3O15182 167 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SRGAP2O75044 1071 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 AKAP3O75969 853 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 FAM13AO94988 1023 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 KIF20AO95235 890 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 NR3C1P04150 777 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 EIF2AK2P19525 551 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 RPS12P25398 132 aaKnown RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CHMP4BP1P59074 171 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SETQ01105 290 aaPredicted RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 ITGB3BPQ13352 177 aaPredicted RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 TNFAIP1Q13829 316 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 COG2Q14746 738 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 HGSNATQ68CP4 663 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 MYCT1Q8N699 235 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SYTL5Q8TDW5 730 aaPredicted RBP11.16□□□□□ -0.62
TMEM260-211ENST00000556648 CCDC42Q96M95 316 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 TAAR1Q96RJ0 339 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 FIZ1Q96SL8 496 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 LXNQ9BS40 222 aa11.16□□□□□ -0.62
TMEM260-211ENST00000556648 SLC38A10Q9HBR0 1119 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms