RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 NCKAP1LP55160 1127 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 TMEM62Q0P6H9 643 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 MTMR1Q13613 665 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 SLC9A5Q14940 896 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 PLEKHG6Q3KR16 790 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 BROXQ5VW32 411 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 PRR23BQ6ZRT6 265 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 PASD1Q8IV76 773 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 SLC5A5Q92911 643 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 NSUN3Q9H649 340 aaKnown RBP7.85□□□□□ -1.15
LINC00643-204ENST00000555934 RBPJLQ9UBG7 517 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 SPO11Q9Y5K1 396 aa7.85□□□□□ -1.15
LINC00643-204ENST00000555934 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.85□□□□□ -1.15
LINC00643-204ENST00000555934 MMEP08473 750 aa7.84□□□□□ -1.15
LINC00643-204ENST00000555934 PMLP29590 882 aa7.84□□□□□ -1.15
LINC00643-204ENST00000555934 YBX1P67809 324 aaKnown RBP7.84□□□□□ -1.15
LINC00643-204ENST00000555934 SRSF3P84103 164 aaKnown RBP7.84□□□□□ -1.15
LINC00643-204ENST00000555934 FAM26EQ8N5C1 309 aa7.84□□□□□ -1.15
LINC00643-204ENST00000555934 CNTD1Q8N815 330 aa7.84□□□□□ -1.15
LINC00643-204ENST00000555934 RASSF10A6NK89 507 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 TMEM253P0C7T8 217 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 FAHP16930 419 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 GJA4P35212 333 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 MC3RP41968 323 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 CATSPEREQ5SY80 951 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 LCE1DQ5T752 114 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 ESRP1Q6NXG1 681 aaKnown RBP7.83□□□□□ -1.16
LINC00643-204ENST00000555934 NECAB2Q7Z6G3 386 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 CLRN3Q8NCR9 226 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 TOE1Q96GM8 510 aaKnown RBP7.83□□□□□ -1.16
LINC00643-204ENST00000555934 CEP89Q96ST8 783 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 SYT3Q9BQG1 590 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 KRTAP4-7Q9BYR0 210 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 ZNF552Q9H707 407 aaPredicted RBP7.83□□□□□ -1.16
LINC00643-204ENST00000555934 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.83□□□□□ -1.16
LINC00643-204ENST00000555934 DTLQ9NZJ0 730 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 KLHL42Q9P2K6 505 aa7.83□□□□□ -1.16
LINC00643-204ENST00000555934 G3BP2Q9UN86 482 aaKnown RBP7.83□□□□□ -1.16
LINC00643-204ENST00000555934 ABLIM1O14639 778 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 FOXP2O15409 715 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 ULK1O75385 1050 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 LRG1P02750 347 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 ASGR2P07307 311 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 MLANAQ16655 118 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 CC2D1AQ6P1N0 951 aaPredicted RBP7.82□□□□□ -1.16
LINC00643-204ENST00000555934 CD300LDQ6UXZ3 194 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 ETV3LQ6ZN32 361 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 AMIGO3Q86WK7 504 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 FAM126BQ8IXS8 530 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 RTF1Q92541 710 aaKnown RBP7.82□□□□□ -1.16
LINC00643-204ENST00000555934 DDX11Q96FC9 970 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 DCP1AQ9NPI6 582 aaPredicted RBP7.82□□□□□ -1.16
LINC00643-204ENST00000555934 ACSS2Q9NR19 701 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 SIRT5Q9NXA8 310 aa7.82□□□□□ -1.16
LINC00643-204ENST00000555934 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.81□□□□□ -1.16
LINC00643-204ENST00000555934 S100BP04271 92 aaPredicted RBP7.81□□□□□ -1.16
LINC00643-204ENST00000555934 SMAD3P84022 425 aaKnown RBP7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TERF2Q15554 542 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 SMAD2Q15796 467 aaKnown RBP7.81□□□□□ -1.16
LINC00643-204ENST00000555934 OLFML2BQ68BL8 750 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TMEM132EQ6IEE7 984 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TEPPQ6URK8 271 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 HIPK4Q8NE63 616 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TTLL11Q8NHH1 800 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 GBP4Q96PP9 640 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 SGPP1Q9BX95 441 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 IRF2BPLQ9H1B7 796 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 EPB41L4BQ9H329 900 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 ZMAT4Q9H898 229 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TYW1Q9NV66 732 aaKnown RBP7.81□□□□□ -1.16
LINC00643-204ENST00000555934 TRHDEQ9UKU6 1024 aa7.81□□□□□ -1.16
LINC00643-204ENST00000555934 MYOCOSA0A1B0GUC4 107 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 PRAMEF22A3QJZ6 481 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 MC4RP32245 332 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 LSP1P33241 339 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 EXOSC10Q01780 885 aaKnown RBP7.8□□□□□ -1.16
LINC00643-204ENST00000555934 PRAMEF18Q5VWM3 479 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 TMC5Q6UXY8 1006 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 STK32CQ86UX6 486 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 MIB1Q86YT6 1006 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 CMIPQ8IY22 773 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 ASB15Q8WXK1 588 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 ASPSCR1Q9BZE9 553 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 PUS7LQ9H0K6 701 aaKnown RBP7.8□□□□□ -1.16
LINC00643-204ENST00000555934 SLC39A2Q9NP94 309 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 UCKL1Q9NWZ5 548 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 FAM53CQ9NYF3 392 aa7.8□□□□□ -1.16
LINC00643-204ENST00000555934 NOC2LQ9Y3T9 749 aaKnown RBP7.8□□□□□ -1.16
LINC00643-204ENST00000555934 LRRC10BA6NIK2 292 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 CYP17A1P05093 508 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 SDHAP31040 664 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 SCAND1P57086 179 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 SESN3P58005 492 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 ABCB5Q2M3G0 1257 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 CR1LQ2VPA4 569 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 ODR4Q5SWX8 454 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 PHF19Q5T6S3 580 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 CD276Q5ZPR3 534 aa7.79□□□□□ -1.16
LINC00643-204ENST00000555934 AHCYL2Q96HN2 611 aaKnown RBP7.79□□□□□ -1.16
LINC00643-204ENST00000555934 MCOLN1Q9GZU1 580 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms