RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ZRSR1Q15695 479 aaKnown RBP16.23■□□□□ 0.19
SHMT2-210ENST00000553950 CCDC183Q5T5S1 534 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 MAP3K21Q5TCX8 1036 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 CNNM3Q8NE01 707 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 ENGASEQ8NFI3 743 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 GPT2Q8TD30 523 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 AFAP1L1Q8TED9 768 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 DHX58Q96C10 678 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 UIMC1Q96RL1 719 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 HSD17B14Q9BPX1 270 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 ANP32EQ9BTT0 268 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 NUP62CLQ9H1M0 184 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 TNMDQ9H2S6 317 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 ZNF215Q9UL58 517 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-210ENST00000553950 PTPN22Q9Y2R2 807 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 PTCH2Q9Y6C5 1203 aa16.23■□□□□ 0.19
SHMT2-210ENST00000553950 POTEB3A0JP26 581 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 NR1I2O75469 434 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 INHAP05111 366 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 SMPD1P17405 629 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 TCF7P36402 384 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-210ENST00000553950 CAP1Q01518 475 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 CYP4A11Q02928 519 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 CACNB2Q08289 660 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-210ENST00000553950 SNW1Q13573 536 aaKnown RBP16.22■□□□□ 0.19
SHMT2-210ENST00000553950 POTEBQ6S5H4 581 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 ABHD15Q6UXT9 468 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 KRBA2Q6ZNG9 492 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 USP49Q70CQ1 688 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 CATSPER3Q86XQ3 398 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 C4orf19Q8IY42 314 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 PDILTQ8N807 584 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 LARP4BQ92615 738 aaKnown RBP16.22■□□□□ 0.19
SHMT2-210ENST00000553950 DYDC2Q96IM9 177 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 NACC1Q96RE7 527 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 GPR20Q99678 358 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 CLSTN2Q9H4D0 955 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 ZNF302Q9NR11 478 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 DNM3Q9UQ16 869 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 GNEQ9Y223 722 aaKnown RBP16.22■□□□□ 0.19
SHMT2-210ENST00000553950 PPME1Q9Y570 386 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 MYH11P35749 1972 aa16.22■□□□□ 0.19
SHMT2-210ENST00000553950 KAT6AQ92794 2004 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 IGKV6D-21A0A0A0MT36 114 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-210ENST00000553950 POTEFA5A3E0 1075 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 FOXN1O15353 648 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 ZEB2O60315 1214 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 KPNA6O60684 536 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 MED24O75448 989 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 LGR5O75473 907 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 LETM1O95202 739 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-210ENST00000553950 XRCC6P12956 609 aaKnown RBP eCLIP16.21■□□□□ 0.19
SHMT2-210ENST00000553950 HOXD8P13378 290 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-210ENST00000553950 CNGA1P29973 690 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 CDC25AP30304 524 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 GRB10Q13322 594 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 E2F4Q16254 413 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 DGKDQ16760 1214 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 SLC9C1Q4G0N8 1177 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 POTEGQ6S5H5 508 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 OTUD6AQ7L8S5 288 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 SMARCAD1Q9H4L7 1026 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 HMX1Q9NP08 348 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-210ENST00000553950 KCND2Q9NZV8 630 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 GABBR1Q9UBS5 961 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 KIAA1024Q9UPX6 916 aa16.21■□□□□ 0.19
SHMT2-210ENST00000553950 ACTN4O43707 911 aaKnown RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 SLITRK3O94933 977 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 MMP3P08254 477 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 SPATA31C1P0DKV0 1188 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 HSDL1Q3SXM5 330 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 PRAMEF19Q5SWL8 479 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 PDXDC2PQ6P474 469 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 FBXO46Q6PJ61 603 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 PLPPR4Q7Z2D5 763 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 CCDC60Q8IWA6 550 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 TPH2Q8IWU9 490 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 BANK1Q8NDB2 785 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 RAD54LQ92698 747 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 PNMA5Q96PV4 448 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 KATNAL1Q9BW62 490 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 UPF3AQ9H1J1 476 aaKnown RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 ANKEF1Q9NU02 776 aa16.2■□□□□ 0.18
SHMT2-210ENST00000553950 DDX20Q9UHI6 824 aaKnown RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 DBR1Q9UK59 544 aaKnown RBP16.2■□□□□ 0.18
SHMT2-210ENST00000553950 A0A087X0B3 334 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 A6NJR5 290 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 PPFIA4O75335 1185 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 EYA4O95677 639 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 STAT5BP51692 787 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 NKX3-2P78367 333 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 PRKCEQ02156 737 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 CTTNQ14247 550 aaKnown RBP16.19■□□□□ 0.18
SHMT2-210ENST00000553950 XKR3Q5GH77 459 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 CAVIN1Q6NZI2 390 aaKnown RBP16.19■□□□□ 0.18
SHMT2-210ENST00000553950 SV2BQ7L1I2 683 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 CKAP2LQ8IYA6 745 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 TRPV1Q8NER1 839 aa16.19■□□□□ 0.18
SHMT2-210ENST00000553950 AFG1LQ8WV93 481 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 297.3 ms