RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 WNT10BO00744 389 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 EXOC3O60645 756 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PLA2G4AP47712 749 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 LMAN1P49257 510 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KRT83P78385 493 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KCNMA1Q12791 1236 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 MTMR2Q13614 643 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 KIAA0753Q2KHM9 967 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SFMBT2Q5VUG0 894 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PLA2G4FQ68DD2 849 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 LMBRD2Q68DH5 695 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ZNF746Q6NUN9 644 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 GUF1Q8N442 669 aaKnown RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ZSWIM2Q8NEG5 633 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 U2AF1L4Q8WU68 220 aaKnown RBP6.16□□□□□ -1.42
LIMA1-215ENST00000552823 HDAC7Q8WUI4 952 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 DCAF4Q8WV16 495 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 WNK4Q96J92 1243 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 TRIM31Q9BZY9 425 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 ACP6Q9NPH0 428 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 SALL4Q9UJQ4 1053 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 TELO2Q9Y4R8 837 aa6.16□□□□□ -1.42
LIMA1-215ENST00000552823 PDE4DIPQ5VU43 2346 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 NRAPQ86VF7 1730 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 ESYT2A0FGR8 921 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 OPLAHO14841 1288 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 FGFR1OPO95684 399 aaKnown RBP6.15□□□□□ -1.42
LIMA1-215ENST00000552823 SPATA31C1P0DKV0 1188 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 GIT2Q14161 759 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 PDIA5Q14554 519 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 SMC1AQ14683 1233 aaKnown RBP6.15□□□□□ -1.42
LIMA1-215ENST00000552823 HAUS3Q68CZ6 603 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 CIAPIN1Q6FI81 312 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 CC2D1AQ6P1N0 951 aaPredicted RBP6.15□□□□□ -1.42
LIMA1-215ENST00000552823 MIER3Q7Z3K6 550 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 FAM178BQ8IXR5 827 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 TAAR1Q96RJ0 339 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 NAA15Q9BXJ9 866 aaKnown RBP6.15□□□□□ -1.42
LIMA1-215ENST00000552823 NT5C3AQ9H0P0 336 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 GOPCQ9HD26 462 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 SERPINA10Q9UK55 444 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 FHOD1Q9Y613 1164 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 MYH15Q9Y2K3 1946 aa6.15□□□□□ -1.42
LIMA1-215ENST00000552823 TACC1O75410 805 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 AKAP3O75969 853 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 HMGCS2P54868 508 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 MUM1L1Q5H9M0 696 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 FAM102BQ5T8I3 360 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 PPP4R3AQ6IN85 833 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 CEP112Q8N8E3 955 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 CHURC1Q8WUH1 139 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 CCDC51Q96ER9 411 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 GTPBP4Q9BZE4 634 aaKnown RBP6.15□□□□□ -1.43
LIMA1-215ENST00000552823 CUEDC2Q9H467 287 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 HAUS4Q9H6D7 363 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 WRAP73Q9P2S5 460 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-215ENST00000552823 A0A1B0GUL6 1792 aa6.15□□□□□ -1.43
LIMA1-215ENST00000552823 A0A087X0T9 212 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PVALEFA0A1B0GWK0 134 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ZSCAN5CA6NGD5 496 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 IPO5O00410 1097 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 FAM228BP0C875 321 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GUCY2FP51841 1108 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 MKRN3Q13064 507 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 TTLL12Q14166 644 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ASIC2Q16515 512 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 LRRC55Q6ZSA7 311 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 MICALL2Q8IY33 904 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ATG4CQ96DT6 458 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SAAL1Q96ER3 474 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 LXNQ9BS40 222 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 IDI2Q9BXS1 227 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 UNC45AQ9H3U1 944 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 COL20A1Q9P218 1284 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SUGT1Q9Y2Z0 365 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 ZHX2Q9Y6X8 837 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 BCORQ6W2J9 1755 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 MYH1P12882 1939 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 K7ENM7 598 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 BACH1O14867 736 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SLC16A4O15374 487 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SLITRK3O94933 977 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 NR3C1P04150 777 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 XRCC5P13010 732 aaKnown RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 IBSPP21815 317 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 KLRC1P26715 233 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 COPB2P35606 906 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 BAG6P46379 1132 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GCLMP48507 274 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 GMPSP49915 693 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-215ENST00000552823 PEX3P56589 373 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 TRIM14Q14142 442 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 EXOC3L4Q17RC7 722 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SLC9C1Q4G0N8 1177 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 TMEM119Q4V9L6 283 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 EPC2Q52LR7 807 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 XKR9Q5GH70 373 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 STYK1Q6J9G0 422 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 RINT1Q6NUQ1 792 aa6.14□□□□□ -1.43
LIMA1-215ENST00000552823 SND1Q7KZF4 910 aaKnown RBP eCLIP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms