RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 DCP1AQ9NPI6 582 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 GGA2Q9UJY4 613 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ATP8A1Q9Y2Q0 1164 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 NPHP3-ACAD11A0A0J9YXS1 232 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 BHMG1C9JSJ3 638 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 F8VZ95 297 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 MAP3K13O43283 966 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 CTNND1O60716 968 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM37O94972 964 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 CHN1P15882 459 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 PEX19P40855 299 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 NAPAP54920 295 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 SATB1Q01826 763 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 SLC18A3Q16572 532 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 AADACL2Q6P093 401 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ZNF571Q7Z3V5 609 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 NELFCDQ8IXH7 590 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 KIF2BQ8N4N8 673 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC57Q8N9N7 239 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ATP8B4Q8TF62 1192 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 GLG1Q92896 1179 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 KCNMB3Q9NPA1 279 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 RTCBQ9Y3I0 505 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 NOC2LQ9Y3T9 749 aaKnown RBP5.31□□□□□ -1.56
LIMA1-214ENST00000552783 ATP6V0A2Q9Y487 856 aa5.31□□□□□ -1.56
LIMA1-214ENST00000552783 GOLGA6L10A6NI86 522 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SLC37A4O43826 429 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 KIF4AO95239 1232 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ANP32DO95626 131 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LDHBP07195 334 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CREB1P16220 341 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 GBP2P32456 591 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RFC4P35249 363 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 IFNAR2P48551 515 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 MECOMQ03112 1051 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 DRP2Q13474 957 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CRYMQ14894 314 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 NKX1-1Q15270 411 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CCDC38Q502W7 563 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ERMARDQ5T6L9 678 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 GKAP1Q5VSY0 366 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SFMBT2Q5VUG0 894 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LRCH2Q5VUJ6 765 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 FAM114A1Q8IWE2 563 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LRRC34Q8IZ02 419 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PNMA1Q8ND90 353 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 C1orf131Q8NDD1 294 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CUL5Q93034 780 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 XPO6Q96QU8 1125 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ELAC2Q9BQ52 826 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PYM1Q9BRP8 204 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TRIM6Q9C030 488 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ACTR5Q9H9F9 607 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 KIF9Q9HAQ2 790 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ATP6V0A4Q9HBG4 840 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ERVK-5Q9HDB9 667 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TCP11L1Q9NUJ3 509 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SEC63Q9UGP8 760 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 NHSL1Q5SYE7 1610 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TOGARAM1Q9Y4F4 1720 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SSU72P8A0A1W2PR75 194 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TLDC2A0PJX2 215 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CCT8L1PA6NM43 557 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ERVV-1B6SEH8 477 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RIMBP2O15034 1052 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 PAEPP09466 180 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 OR52Z1P0C646 297 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CALM1P0DP23 149 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CALM2P0DP24 149 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CALM3P0DP25 149 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 EZRP15311 586 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SLC9A1P19634 815 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SLCO1A2P46721 670 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ITPK1Q13572 414 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RPS6KA1Q15418 735 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SLC9C1Q4G0N8 1177 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 DCAF12L1Q5VU92 463 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 DPY19L2P1Q6NXN4 242 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 GJB7Q6PEY0 223 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 LRIG3Q6UXM1 1119 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TPTE2Q6XPS3 522 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 BZW1Q7L1Q6 419 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TRMT1LQ7Z2T5 733 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RBM46Q8TBY0 533 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ATXN2LQ8WWM7 1075 aaKnown RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 DDX12PQ92771 950 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 RNF25Q96BH1 459 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 IKZF4Q9H2S9 585 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 BIN2Q9UBW5 565 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SLC12A4Q9UP95 1085 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CD2APQ9Y5K6 639 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 NUP98P52948 1817 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 ENO4A6NNW6 628 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 KRIT1O00522 736 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 BUB1BO60566 1050 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 DNAJC8O75937 253 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-214ENST00000552783 CLSTN1O94985 981 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 TDP2O95551 362 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 SERPING1P05155 500 aa5.3□□□□□ -1.56
LIMA1-214ENST00000552783 KRT18P05783 430 aaKnown RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms