RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 RCAN3Q9UKA8 241 aa7.99□□□□□ -1.13
LIMA1-210ENST00000552045 NUB1Q9Y5A7 615 aa7.99□□□□□ -1.13
LIMA1-210ENST00000552045 PRR19A6NJB7 356 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 ERC2O15083 957 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 USP2O75604 605 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-210ENST00000552045 ZRANB2O95218 330 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIMA1-210ENST00000552045 H2AFB1P0C5Y9 115 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 H2AFB2P0C5Z0 115 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 TRIM27P14373 513 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 EPHA5P54756 1037 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 GBX1Q14549 363 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 ACAP2Q15057 778 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 BRD3Q15059 726 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 HSF5Q4G112 596 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-210ENST00000552045 EMC4Q5J8M3 183 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 STEAP3Q658P3 488 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 CYP4F22Q6NT55 531 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 SVIPQ8NHG7 77 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 FBXO41Q8TF61 875 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 TGFBRAP1Q8WUH2 860 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 TIFAQ96CG3 184 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 ZNF496Q96IT1 587 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-210ENST00000552045 C16orf92Q96LL3 132 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 LRGUKQ96M69 825 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 CARS2Q9HA77 564 aaKnown RBP7.98□□□□□ -1.13
LIMA1-210ENST00000552045 IMPACTQ9P2X3 320 aa7.98□□□□□ -1.13
LIMA1-210ENST00000552045 A0A1W2PQ27 194 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 A0A1W2PQ64 194 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 A0A1W2PQC6 194 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 A0A1W2PQD8 194 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 SLC27A2O14975 620 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 MAFKO60675 156 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 ZGLP1P0C6A0 271 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 SDHAP31040 664 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 GJA4P35212 333 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 MVKQ03426 396 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 IKZF1Q13422 519 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 EPHA7Q15375 998 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 CHRNA2Q15822 529 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 TTLL7Q6ZT98 887 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 CEP128Q6ZU80 1094 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 SLC51AQ86UW1 340 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 RTF1Q92541 710 aaKnown RBP7.97□□□□□ -1.13
LIMA1-210ENST00000552045 JADE3Q92613 823 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 ADAMTS10Q9H324 1103 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 SMOC1Q9H4F8 434 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 PDLIM7Q9NR12 457 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 LMCD1Q9NZU5 365 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 USP36Q9P275 1121 aaKnown RBP7.97□□□□□ -1.13
LIMA1-210ENST00000552045 MSRAQ9UJ68 235 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 TELO2Q9Y4R8 837 aa7.97□□□□□ -1.13
LIMA1-210ENST00000552045 FAM90A27PA6NNH2 459 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 HGSO14964 777 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 BUB1BO60566 1050 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 TADA3O75528 432 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 NTRK1P04629 796 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 ASGR2P07307 311 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 MSL3P1P0C860 447 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 PTPN1P18031 435 aaKnown RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 FNTBP49356 437 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 RSPO4Q2I0M5 234 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 ARHGAP29Q52LW3 1261 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 RRP12Q5JTH9 1297 aaKnown RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 NKAPLQ5M9Q1 402 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 CATSPEREQ5SY80 951 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 RBM12BQ8IXT5 1001 aaKnown RBP7.96□□□□□ -1.14
LIMA1-210ENST00000552045 MISP3Q96FF7 219 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 SARGQ9BW04 601 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 DNAJC28Q9NX36 388 aa7.96□□□□□ -1.14
LIMA1-210ENST00000552045 C4BPAP04003 597 aaKnown RBP7.95□□□□□ -1.14
LIMA1-210ENST00000552045 TMEM253P0C7T8 217 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 HSPA6P17066 643 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 ENPP1P22413 925 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 AKAP5P24588 427 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 TACR1P25103 407 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 HOXA10P31260 410 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-210ENST00000552045 SLC6A11P48066 632 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 MOGSQ13724 837 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 GRM3Q14832 879 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 FSCN1Q16658 493 aaKnown RBP7.95□□□□□ -1.14
LIMA1-210ENST00000552045 RALGPS1Q5JS13 557 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 BTBD8Q5XKL5 378 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 GALNT18Q6P9A2 607 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-210ENST00000552045 ANKS4BQ8N8V4 417 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 SSH1Q8WYL5 1049 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 NMRK2Q9NPI5 230 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 RIC8BQ9NVN3 520 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 SLAMF8Q9P0V8 285 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 KCNG1Q9UIX4 513 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 ACSL6Q9UKU0 697 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 TAF6LQ9Y6J9 622 aa7.95□□□□□ -1.14
LIMA1-210ENST00000552045 LDHAP00338 332 aaKnown RBP7.94□□□□□ -1.14
LIMA1-210ENST00000552045 AGXTP21549 392 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 CD96P40200 585 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 ADCY1Q08828 1119 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 TUSC3Q13454 348 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 SLC14A2Q15849 920 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 B3GNT9Q6UX72 402 aa7.94□□□□□ -1.14
LIMA1-210ENST00000552045 CXorf67Q86X51 503 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms