RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 BANK1Q8NDB2 785 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 DIS3LQ8TF46 1054 aaKnown RBP23.81■■□□□ 1.4
VPS29-206ENST00000549578 KAT2BQ92831 832 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 EIF2AK1Q9BQI3 630 aaKnown RBP23.81■■□□□ 1.4
VPS29-206ENST00000549578 SCAND2PQ9GZW5 306 aaPredicted RBP23.81■■□□□ 1.4
VPS29-206ENST00000549578 CSRNP2Q9H175 543 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 AZI2Q9H6S1 392 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 ZNF302Q9NR11 478 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 RGL1Q9NZL6 768 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 PHF24Q9UPV7 400 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 WDR81Q562E7 1941 aa23.81■■□□□ 1.4
VPS29-206ENST00000549578 CCDC85CA6NKD9 419 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 F2P00734 622 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 ME1P48163 572 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 STAT5BP51692 787 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 CHMP4BP1P59074 171 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 DYDC2Q96IM9 177 aa23.8■■□□□ 1.4
VPS29-206ENST00000549578 MTG1Q9BT17 334 aaPredicted RBP23.8■■□□□ 1.4
VPS29-206ENST00000549578 H3BRB1 525 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 MARK3P27448 753 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 LONP1P36776 959 aaKnown RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 PSMC6P62333 389 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 SPECC1Q5M775 1068 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 FAM160B1Q5W0V3 765 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 PDXDC2PQ6P474 469 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 ANKLE1Q8NAG6 615 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 AFAP1L1Q8TED9 768 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 PPP1R13LQ8WUF5 828 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 SMARCAD1Q9H4L7 1026 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 TUT1Q9H6E5 874 aaKnown RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 PCDHA7Q9UN72 937 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 IGSF9BQ9UPX0 1349 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 A0A1W2PQ45 241 aaPredicted RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 A0A1W2PQY0 241 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 SOX10P56693 466 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 CTTNQ14247 550 aaKnown RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 ERMNQ8TAM6 284 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 SNX29Q8TEQ0 813 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 HSD17B14Q9BPX1 270 aa23.79■■□□□ 1.4
VPS29-206ENST00000549578 WRAP73Q9P2S5 460 aaPredicted RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 ZNF215Q9UL58 517 aaPredicted RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 MAFBQ9Y5Q3 323 aaPredicted RBP23.79■■□□□ 1.4
VPS29-206ENST00000549578 DNAH12Q6ZR08 3092 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 ZNF862O60290 1169 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 MED24O75448 989 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 SLITRK3O94933 977 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 P4HBP07237 508 aaKnown RBP23.78■■□□□ 1.4
VPS29-206ENST00000549578 PSEN2P49810 448 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 AXDND1Q5T1B0 1012 aaPredicted RBP23.78■■□□□ 1.4
VPS29-206ENST00000549578 PLPPR4Q7Z2D5 763 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 TRMT1LQ7Z2T5 733 aaKnown RBP23.78■■□□□ 1.4
VPS29-206ENST00000549578 AK8Q96MA6 479 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 GLT1D1Q96MS3 346 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 LXNQ9BS40 222 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 MMTAG2Q9BU76 263 aaKnown RBP23.78■■□□□ 1.4
VPS29-206ENST00000549578 ERAP1Q9NZ08 941 aa23.78■■□□□ 1.4
VPS29-206ENST00000549578 MYH9P35579 1960 aaKnown RBP23.78■■□□□ 1.4
VPS29-206ENST00000549578 SCN10AQ9Y5Y9 1956 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 CUTAO60888 179 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 CABYRO75952 493 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 SPATA31C1P0DKV0 1188 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 ATP4AP20648 1035 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 QARSP47897 775 aaKnown RBP23.77■■□□□ 1.4
VPS29-206ENST00000549578 PSMC5P62195 406 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 MFSD10Q14728 455 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 KIAA0753Q2KHM9 967 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 KRT79Q5XKE5 535 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 HAUS3Q68CZ6 603 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 USP49Q70CQ1 688 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 TPH2Q8IWU9 490 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 CKAP2LQ8IYA6 745 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 NEK9Q8TD19 979 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 ATP6V0A1Q93050 837 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 VTI1AQ96AJ9 217 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 RNPEPQ9H4A4 650 aa23.77■■□□□ 1.4
VPS29-206ENST00000549578 POTEB3A0JP26 581 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 HAS3O00219 553 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 CAPN2P17655 700 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 CCT6AP40227 531 aaKnown RBP23.76■■□□□ 1.39
VPS29-206ENST00000549578 PRKCEQ02156 737 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 POTEBQ6S5H4 581 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 CATSPER3Q86XQ3 398 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 PAWRQ96IZ0 340 aaKnown RBP23.76■■□□□ 1.39
VPS29-206ENST00000549578 EPSTI1Q96J88 318 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 KATNAL1Q9BW62 490 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 SENP6Q9GZR1 1112 aaPredicted RBP23.76■■□□□ 1.39
VPS29-206ENST00000549578 STARD7Q9NQZ5 370 aa23.76■■□□□ 1.39
VPS29-206ENST00000549578 RPA1P27694 616 aa23.75■■□□□ 1.39
VPS29-206ENST00000549578 PLCB4Q15147 1175 aa23.75■■□□□ 1.39
VPS29-206ENST00000549578 ZRSR1Q15695 479 aaKnown RBP23.75■■□□□ 1.39
VPS29-206ENST00000549578 ECM1Q16610 540 aa23.75■■□□□ 1.39
VPS29-206ENST00000549578 SYMPKQ92797 1274 aaKnown RBP23.75■■□□□ 1.39
VPS29-206ENST00000549578 POLR3CQ9BUI4 534 aaPredicted RBP23.75■■□□□ 1.39
VPS29-206ENST00000549578 TUFT1Q9NNX1 390 aa23.75■■□□□ 1.39
VPS29-206ENST00000549578 GRIN2DO15399 1336 aa23.75■■□□□ 1.39
VPS29-206ENST00000549578 COL6A1P12109 1028 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 UBA7P41226 1012 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 SLC26A2P50443 739 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 NBPF20Q3BBV1 942 aa23.74■■□□□ 1.39
VPS29-206ENST00000549578 TPRNQ4KMQ1 711 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms