RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.25□□□□□ -0.458e-7■■■■■ 154.8
CUX1-212ENST00000547394 ARHGAP20Q9P2F6 1191 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 FEM1BQ9UK73 627 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 PCDHB13Q9Y5F0 798 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TISP43B9A030 160 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TBC1D12O60347 775 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 TBCAO75347 108 aaKnown RBP12.25□□□□□ -0.45
CUX1-212ENST00000547394 TADA3O75528 432 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 PNMA6AP0CW24 399 aaPredicted RBP12.25□□□□□ -0.45
CUX1-212ENST00000547394 MTMR14Q8NCE2 650 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 CLEC4DQ8WXI8 215 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 CAPZA3Q96KX2 299 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 HSD17B14Q9BPX1 270 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 LSM14BQ9BX40 385 aaKnown RBP12.25□□□□□ -0.45
CUX1-212ENST00000547394 MTFR1LQ9H019 292 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 KCNH7Q9NS40 1196 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 ZNF446Q9NWS9 450 aa12.25□□□□□ -0.45
CUX1-212ENST00000547394 GOLGA6L9A6NEM1 432 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 FECHP22830 423 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 EIF4A3P38919 411 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 POLR2FP61218 127 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 RPS6P62753 249 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 ZBED6P86452 979 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 UTP14CQ5TAP6 766 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 MOXD1Q6UVY6 613 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CACNA2D4Q7Z3S7 1137 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 RDH13Q8NBN7 331 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 ERGIC2Q96RQ1 377 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 LXNQ9BS40 222 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 LRRC27Q9C0I9 530 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 ZHX2Q9Y6X8 837 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 EPS15P42566 896 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 DNA2P51530 1060 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 PSMD2Q13200 908 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 FKBP1CQ5VVH2 108 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 PRPF38AQ8NAV1 312 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 SH2D4AQ9H788 454 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 MLXIPQ9HAP2 919 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 ZNHIT6Q9NWK9 470 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.24□□□□□ -0.45
CUX1-212ENST00000547394 TBX3O15119 743 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 ATP9AO75110 1047 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 ICAM1P05362 532 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CYP3A4P08684 503 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 MRPS9P82933 396 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 GFPT1Q06210 699 aaPredicted RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 ITGB3BPQ13352 177 aaPredicted RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 KCTD19Q17RG1 926 aaPredicted RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 TDRD12Q587J7 1177 aaKnown RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 GJB7Q6PEY0 223 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CNKSR2Q8WXI2 1034 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CCDC42Q96M95 316 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CCDC94Q9BW85 323 aaPredicted RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 ST7Q9NRC1 585 aa12.24□□□□□ -0.45
CUX1-212ENST00000547394 CTDP1Q9Y5B0 961 aaPredicted RBP12.24□□□□□ -0.45
CUX1-212ENST00000547394 COL2A1P02458 1487 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 RGPD3A6NKT7 1758 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 RGPD4Q7Z3J3 1758 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 TESPA1A2RU30 521 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 AKAP3O75969 853 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 FAM13AO94988 1023 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 SLC9A1P19634 815 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 PTPROQ16827 1216 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 FAM160B2Q86V87 743 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 SLC5A5Q92911 643 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 JAKMIP2Q96AA8 810 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 DEF6Q9H4E7 631 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 GGA3Q9NZ52 723 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 CTAGE9A4FU28 777 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 NOL4O94818 638 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 ATP1A1P05023 1023 aaKnown RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 ZSCAN20P17040 1043 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 CLCN6P51797 869 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 ZNF280AP59817 542 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 MRPS25P82663 173 aaKnown RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 COBLL1Q53SF7 1204 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 NEK11Q8NG66 645 aa12.23□□□□□ -0.45
CUX1-212ENST00000547394 SYTL5Q8TDW5 730 aaPredicted RBP12.23□□□□□ -0.45
CUX1-212ENST00000547394 RBAK-RBAKDNI3L0D1 243 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 ZNF185O15231 689 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 EYA4O95677 639 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 RHOXF2BP0C7M4 288 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 CYP2J2P51589 502 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 SOX10P56693 466 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 KCNH2Q12809 1159 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 MEA1Q16626 185 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 UGCGQ16739 394 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 KNOP1Q1ED39 458 aaKnown RBP12.22□□□□□ -0.45
CUX1-212ENST00000547394 ARHGAP27Q6ZUM4 889 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 ZNF397Q8NF99 534 aaPredicted RBP12.22□□□□□ -0.45
CUX1-212ENST00000547394 BAP1Q92560 729 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 RHOXF2Q9BQY4 288 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 GPRC5CQ9NQ84 441 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 PSME4Q14997 1843 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 FRMD3A2A2Y4 597 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 AKR1B10O60218 316 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 RAPGEF1Q13905 1077 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 TRERF1Q96PN7 1200 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 MXRA8Q9BRK3 442 aa12.22□□□□□ -0.45
CUX1-212ENST00000547394 CGNQ9P2M7 1197 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms