RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 KCND2Q9NZV8 630 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 PKD2L1Q9P0L9 805 aa17.93■□□□□ 0.46
PRPF40A-212ENST00000545856 EML1O00423 815 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 SLITRK3O94933 977 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 ZNF202O95125 648 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 HSPA1AP0DMV8 641 aaKnown RBP17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 HSPA1BP0DMV9 641 aaKnown RBP17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 RARBP10826 455 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 STAT6P42226 847 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 AMPD3Q01432 767 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 E2F4Q16254 413 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 CATSPER3Q86XQ3 398 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 OR6J1Q8NGC5 347 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 GPT2Q8TD30 523 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 GJA10Q969M2 543 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 LXNQ9BS40 222 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 UPF3AQ9H1J1 476 aaKnown RBP17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 TSKSQ9UJT2 592 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 DNM3Q9UQ16 869 aa17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 MAFBQ9Y5Q3 323 aaPredicted RBP17.92■□□□□ 0.46
PRPF40A-212ENST00000545856 DDX39AO00148 427 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 FOXN1O15353 648 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 POLR2DO15514 142 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ECM2O94769 699 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 SPATA31C1P0DKV0 1188 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 GJA9P57773 515 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 GRB10Q13322 594 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 DGKDQ16760 1214 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 FBXO46Q6PJ61 603 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 KRBA2Q6ZNG9 492 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 USP49Q70CQ1 688 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 TLK2Q86UE8 772 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 GOLPH3LQ9H4A5 285 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 SMARCAD1Q9H4L7 1026 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 HMX1Q9NP08 348 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ZNF302Q9NR11 478 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ANKEF1Q9NU02 776 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 DACT1Q9NYF0 836 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 DBR1Q9UK59 544 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ZNF215Q9UL58 517 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 PTCH2Q9Y6C5 1203 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 KAT6AQ92794 2004 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 GSTTP1A0A1W2PQM5 241 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 PP2D1A8MPX8 630 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ZEB2O60315 1214 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 MED24O75448 989 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 LETM1O95202 739 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 INHAP05111 366 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 ELNP15502 786 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 LIG1P18858 919 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 PLCG1P19174 1290 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 CST5P28325 142 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 TCF7P36402 384 aaPredicted RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 KARSQ15046 597 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 HSDL1Q3SXM5 330 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 SPECC1Q5M775 1068 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 OTUD6AQ7L8S5 288 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 EXOC8Q8IYI6 725 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 CNNM3Q8NE01 707 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 LARP4BQ92615 738 aaKnown RBP17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 PNMA5Q96PV4 448 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 PRDM10Q9NQV6 1147 aa17.91■□□□□ 0.46
PRPF40A-212ENST00000545856 POTEB3A0JP26 581 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 BACH1O14867 736 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 TRAK2O60296 914 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 NR1I2O75469 434 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 EYA4O95677 639 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 XKR3Q5GH77 459 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 CCDC183Q5T5S1 534 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 CNNM4Q6P4Q7 775 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 POTEBQ6S5H4 581 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 TRPV1Q8NER1 839 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 DYDC2Q96IM9 177 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 TIPINQ9BVW5 301 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 GTPBP4Q9BZE4 634 aaKnown RBP17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 CLSTN2Q9H4D0 955 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 KBTBD4Q9NVX7 518 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 ERAP1Q9NZ08 941 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 DDX20Q9UHI6 824 aaKnown RBP17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 KIAA1024Q9UPX6 916 aa17.9■□□□□ 0.46
PRPF40A-212ENST00000545856 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 ACTN4O43707 911 aaKnown RBP17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 MMP3P08254 477 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 CDC25AP30304 524 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 STAT5BP51692 787 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 SLC9C1Q4G0N8 1177 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 NAALADL2Q58DX5 795 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 PDXDC2PQ6P474 469 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 SV2BQ7L1I2 683 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 CCDC60Q8IWA6 550 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 RAD54LQ92698 747 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 KATNAL1Q9BW62 490 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 NUP62CLQ9H1M0 184 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 BMP2KQ9NSY1 1161 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 GABBR1Q9UBS5 961 aa17.89■□□□□ 0.45
PRPF40A-212ENST00000545856 SCN10AQ9Y5Y9 1956 aa17.88■□□□□ 0.45
PRPF40A-212ENST00000545856 CYP4A11Q02928 519 aa17.88■□□□□ 0.45
PRPF40A-212ENST00000545856 PRAMEF19Q5SWL8 479 aa17.88■□□□□ 0.45
PRPF40A-212ENST00000545856 TPH2Q8IWU9 490 aa17.88■□□□□ 0.45
PRPF40A-212ENST00000545856 PDILTQ8N807 584 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms