RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 HCSTQ9UBK5 93 aa18.01■□□□□ 0.47
CLSTN3-216ENST00000545663 HIDE1A8MVS5 230 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 FSCN2O14926 492 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 FOXP2O15409 715 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 FGF18O76093 207 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 GNAT1P11488 350 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 CD52P31358 61 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 FBXO47Q5MNV8 452 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 PLPP4Q5VZY2 271 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 NPAS4Q8IUM7 802 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 ERVK-5Q9HDB9 667 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 TMEM260Q9NX78 707 aa18■□□□□ 0.47
CLSTN3-216ENST00000545663 SMARCA5O60264 1052 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 RAB11FIP3O75154 756 aa17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 ATXN1P54253 815 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 TSHZ3Q63HK5 1081 aa17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 KANK3Q6NY19 840 aa17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 IL31RAQ8NI17 732 aa17.99■□□□□ 0.47
CLSTN3-216ENST00000545663 SRGAP2BP0DMP2 458 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 HOXB8P17481 243 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 UBE3AQ05086 875 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 CDC37Q16543 378 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 SPOUT1Q5T280 376 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 SIX5Q8N196 739 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 FEZF2Q8TBJ5 459 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 ADAM7Q9H2U9 754 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 PCDHB12Q9Y5F1 795 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 ABCB11O95342 1321 aa17.98■□□□□ 0.47
CLSTN3-216ENST00000545663 HSPD1P10809 573 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 UTP14CQ5TAP6 766 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 TSHZ1Q6ZSZ6 1077 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 ZDHHC14Q8IZN3 488 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 RASGRP4Q8TDF6 673 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 ZBTB10Q96DT7 871 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 RTP3Q9BQQ7 232 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 PDCD2LQ9BRP1 358 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 CDY2AQ9Y6F7 541 aa17.97■□□□□ 0.47
CLSTN3-216ENST00000545663 FSD2A1L4K1 749 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 DCDC2BA2VCK2 349 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 CFBP00751 764 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 SNHG28P0DPA3 235 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 RRP12Q5JTH9 1297 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 CES5AQ6NT32 575 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 KCNV1Q6PIU1 500 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 VSIG10LQ86VR7 867 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 MCF2L2Q86YR7 1114 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 THNSL1Q8IYQ7 743 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 C12orf76Q8N812 135 aaPredicted RBP17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 TDRD5Q8NAT2 981 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 PANK1Q8TE04 598 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 DNAJB3Q8WWF6 145 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 USP26Q9BXU7 913 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 FRYQ5TBA9 3013 aa17.96■□□□□ 0.47
CLSTN3-216ENST00000545663 NOP56O00567 594 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 OPLAHO14841 1288 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 ZFYP08048 801 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 HOXB3P14651 431 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 CHAMP1Q96JM3 812 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 NECTIN4Q96NY8 510 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 GPR20Q99678 358 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 TCF25Q9BQ70 676 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 AAASQ9NRG9 546 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 TOMM22Q9NS69 142 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 ECHDC1Q9NTX5 307 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 ASPMQ8IZT6 3477 aa17.95■□□□□ 0.46
CLSTN3-216ENST00000545663 STK25O00506 426 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 ZZEF1O43149 2961 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 ORC4O43929 436 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 STAG3L1P0CL83 205 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 SCG2P13521 617 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 TPRNQ4KMQ1 711 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 KIAA0319Q5VV43 1072 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 PDE12Q6L8Q7 609 aaKnown RBP17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 CYFIP1Q7L576 1253 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 ADGRF4Q8IZF3 695 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 COLGALT1Q8NBJ5 622 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 SUMF1Q8NBK3 374 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 MAF1Q9H063 256 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 ENTPD7Q9NQZ7 604 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 TYW1Q9NV66 732 aaKnown RBP17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 FBXL21Q9UKT6 434 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 CCDC171Q6TFL3 1326 aa17.94■□□□□ 0.46
CLSTN3-216ENST00000545663 TBKBP1A7MCY6 615 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 SP9P0CG40 484 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 TGFB3P10600 412 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 HOXA13P31271 388 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 ITIH3Q06033 890 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 PGM5Q15124 567 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 QRICH1Q2TAL8 776 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 RARS2Q5T160 578 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 FAM102BQ5T8I3 360 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 TMX1Q9H3N1 280 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 LRFN2Q9ULH4 789 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 PADI3Q9ULW8 664 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 MRPL11Q9Y3B7 192 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 HCFC2Q9Y5Z7 792 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 NRCAMQ92823 1304 aa17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 FASNP49327 2511 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-216ENST00000545663 FGRP09769 529 aa17.92■□□□□ 0.46
CLSTN3-216ENST00000545663 HSD17B4P51659 736 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms