RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 BTBD7Q9P203 1132 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 AGTPBP1Q9UPW5 1226 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 TRIM49BA6NDI0 452 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 TRAF5O00463 557 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 DHX15O43143 795 aaKnown RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 URI1O94763 535 aaPredicted RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 TUBB4AP04350 444 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 MUTP22033 750 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 CASP14P31944 242 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 FXR1P51114 621 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 PMS1P54277 932 aaKnown RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 IRX3P78415 501 aaPredicted RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 MOGSQ13724 837 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 CTTNQ14247 550 aaKnown RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 EPHA7Q15375 998 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 VSIG10LQ86VR7 867 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 PANX2Q96RD6 677 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 ASCC2Q9H1I8 757 aaPredicted RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 PANK4Q9NVE7 773 aa15.89■□□□□ 0.13
VPS33A-209ENST00000544349 DDX41Q9UJV9 622 aaKnown RBP15.89■□□□□ 0.13
VPS33A-209ENST00000544349 NR3C2P08235 984 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 CCNE1P24864 410 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 COASYQ13057 564 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 PABPC4Q13310 644 aaKnown RBP eCLIP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 ARSHQ5FYA8 562 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 RIOX2Q8IUF8 465 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 TPH2Q8IWU9 490 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 NSUN6Q8TEA1 469 aaKnown RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 ZMYND15Q9H091 742 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 ZNF446Q9NWS9 450 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 PKD2L1Q9P0L9 805 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 RNF225M0QZC1 329 aaPredicted RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 DDX39AO00148 427 aaKnown RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 PEX10O60683 326 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 EYA4O95677 639 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 CCND2P30279 289 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 GJA5P36382 358 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 GNG11P61952 73 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 ITGB3BPQ13352 177 aaPredicted RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 TTI2Q6NXR4 508 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 FASTKD5Q7L8L6 764 aaKnown RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 P2RX5Q93086 422 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 CARD6Q9BX69 1037 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 IRX2Q9BZI1 471 aaPredicted RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 VPS16Q9H269 839 aa15.88■□□□□ 0.13
VPS33A-209ENST00000544349 LIMA1Q9UHB6 759 aaKnown RBP15.88■□□□□ 0.13
VPS33A-209ENST00000544349 NPHP3-ACAD11A0A0J9YXS1 232 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 UNCXA6NJT0 531 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 TADA3O75528 432 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 H2AFXP16104 143 aaPredicted RBP15.87■□□□□ 0.13
VPS33A-209ENST00000544349 COPB1P53618 953 aaKnown RBP15.87■□□□□ 0.13
VPS33A-209ENST00000544349 HERVK_113P62684 666 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 PPFIBP1Q86W92 1011 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 CCDC65Q8IXS2 484 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 SLC10A4Q96EP9 437 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 SPATC1LQ9H0A9 340 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 ZNF408Q9H9D4 720 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 TBC1D22BQ9NU19 505 aa15.87■□□□□ 0.13
VPS33A-209ENST00000544349 LCTP09848 1927 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 BICDL2A1A5D9 508 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 TESPA1A2RU30 521 aaPredicted RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 KCNJ18B7U540 433 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 ZSCAN20P17040 1043 aaPredicted RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 KCNJ12Q14500 433 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 GUF1Q8N442 669 aaKnown RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 CTAGE1Q96RT6 745 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 BHMT2Q9H2M3 363 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 RRAGCQ9HB90 399 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 FBXO40Q9UH90 709 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 ITIH6Q6UXX5 1313 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 FRMD3A2A2Y4 597 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 KRT18P05783 430 aaKnown RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 CACNB1Q02641 598 aaPredicted RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 SPAG1Q07617 926 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 GIT2Q14161 759 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 ARHGAP29Q52LW3 1261 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 TCP11X2Q5H9J9 407 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 GPAT2Q6NUI2 795 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 MIER3Q7Z3K6 550 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 IRF2BP1Q8IU81 584 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 NEK9Q8TD19 979 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 PIGOQ8TEQ8 1089 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 GPRASP2Q96D09 838 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 TRIM47Q96LD4 638 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 DUSP9Q99956 384 aaKnown RBP15.86■□□□□ 0.13
VPS33A-209ENST00000544349 OGFRQ9NZT2 677 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 ADGRG1Q9Y653 693 aa15.86■□□□□ 0.13
VPS33A-209ENST00000544349 GOLGA6L9A6NEM1 432 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 LRRC10BA6NIK2 292 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 MAFGO15525 162 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 ATP9AO75110 1047 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 CNMDO75829 334 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 RAD51AP2Q09MP3 1159 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 SNAPC2Q13487 334 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 FILIP1LQ4L180 1135 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 FAM26FQ5R3K3 315 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 ANKRD40Q6AI12 368 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 CENPPQ6IPU0 288 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 NLRX1Q86UT6 975 aa15.85■□□□□ 0.13
VPS33A-209ENST00000544349 ANKRD35Q8N283 1001 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms