RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GCNT3O95395 438 aa18.02■□□□□ 0.47
COL4A1-204ENST00000543140 ALAS1P13196 640 aa18.02■□□□□ 0.47
COL4A1-204ENST00000543140 PRELPP51888 382 aa18.02■□□□□ 0.47
COL4A1-204ENST00000543140 KNOP1Q1ED39 458 aaKnown RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 RSRC2Q7L4I2 434 aaKnown RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 TRIM59Q8IWR1 403 aa18.02■□□□□ 0.47
COL4A1-204ENST00000543140 EIF3CQ99613 913 aaKnown RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 UNC45AQ9H3U1 944 aa18.02■□□□□ 0.47
COL4A1-204ENST00000543140 RAVER2Q9HCJ3 691 aaKnown RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 WRAP73Q9P2S5 460 aaPredicted RBP18.02■□□□□ 0.47
COL4A1-204ENST00000543140 IPO5O00410 1097 aaKnown RBP18.01■□□□□ 0.47
COL4A1-204ENST00000543140 CETN3O15182 167 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 EIF4A3P38919 411 aaKnown RBP18.01■□□□□ 0.47
COL4A1-204ENST00000543140 ZNF280AP59817 542 aaPredicted RBP18.01■□□□□ 0.47
COL4A1-204ENST00000543140 RASSF7Q02833 373 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 TNFAIP1Q13829 316 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 IL31RAQ8NI17 732 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 BAP1Q92560 729 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 IQCDQ96DY2 449 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 TUFT1Q9NNX1 390 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 PRDM10Q9NQV6 1147 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 GNA14O95837 355 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 ITGB5P18084 799 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 CHMP4BP1P59074 171 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 CDK17Q00537 523 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 EPM2AIP1Q7L775 607 aaPredicted RBP18.01■□□□□ 0.47
COL4A1-204ENST00000543140 IKZF4Q9H2S9 585 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 HDAC6Q9UBN7 1215 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 HACL1Q9UJ83 578 aa18.01■□□□□ 0.47
COL4A1-204ENST00000543140 DDX41Q9UJV9 622 aaKnown RBP18.01■□□□□ 0.47
COL4A1-204ENST00000543140 MACROD2A1Z1Q3 448 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 FLOT1O75955 427 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 HNRNPH3P31942 346 aaKnown RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 MTMR2Q13614 643 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 SPA17Q15506 151 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 EDRF1Q3B7T1 1238 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 NBPF12Q5TAG4 269 aaPredicted RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 PRAMEF18Q5VWM3 479 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 SRGAP1Q7Z6B7 1085 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 BANK1Q8NDB2 785 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 CLEC4DQ8WXI8 215 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 GOLGA1Q92805 767 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 LSM14BQ9BX40 385 aaKnown RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 DEFB129Q9H1M3 183 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 DEF6Q9H4E7 631 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 CNOT7Q9UIV1 285 aaKnown RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 FZD1Q9UP38 647 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 RBBP6Q7Z6E9 1792 aaKnown RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 WDR46O15213 610 aaKnown RBP18■□□□□ 0.47
COL4A1-204ENST00000543140 KRT86O43790 486 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 NOL4O94818 638 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 HSD17B4P51659 736 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 MUM1L1Q5H9M0 696 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 MYCT1Q8N699 235 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 WDR11Q9BZH6 1224 aa18■□□□□ 0.47
COL4A1-204ENST00000543140 BRCA1P38398 1863 aaKnown RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 CLIC2O15247 247 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 FAM13AO94988 1023 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 ZSCAN20P17040 1043 aaPredicted RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 NMT1P30419 496 aaKnown RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 EPS15P42566 896 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 KIF11P52732 1056 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 POLR2FP61218 127 aaKnown RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 PPP4R3CPQ6ZMV5 832 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 C1orf186Q6ZWK4 172 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 MXRA8Q9BRK3 442 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 AKR1B10O60218 316 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 MARSP56192 900 aaKnown RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 KCNH2Q12809 1159 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 ZC2HC1CQ53FD0 456 aaPredicted RBP17.99■□□□□ 0.47
COL4A1-204ENST00000543140 PDXDC1Q6P996 788 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 KSR1Q8IVT5 923 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 TEX2Q8IWB9 1127 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 LPAR1Q92633 364 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 TEKT3Q9BXF9 490 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 KIAA1683Q9H0B3 1180 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 TRAF3IP3Q9Y228 551 aa17.99■□□□□ 0.47
COL4A1-204ENST00000543140 CTNND1O60716 968 aaKnown RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 SETQ01105 290 aaPredicted RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 ZC3H3Q8IXZ2 948 aaKnown RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 IFIH1Q9BYX4 1025 aaKnown RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 KCNH7Q9NS40 1196 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 MYO6Q9UM54 1294 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 ATP1A1P05023 1023 aaKnown RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 VCAM1P19320 739 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 KIF5AQ12840 1032 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 SPP2Q13103 211 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 GPR161Q8N6U8 529 aaKnown RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 CEP112Q8N8E3 955 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 RABGGTAQ92696 567 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 LXNQ9BS40 222 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 OGFRQ9NZT2 677 aa17.98■□□□□ 0.47
COL4A1-204ENST00000543140 ARMCX3Q9UH62 379 aaPredicted RBP17.98■□□□□ 0.47
COL4A1-204ENST00000543140 ASTN1O14525 1302 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 MYH10P35580 1976 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 PDXKO00764 312 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 CALUO43852 315 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 NR3C1P04150 777 aa17.97■□□□□ 0.47
COL4A1-204ENST00000543140 RPS12P25398 132 aaKnown RBP17.97■□□□□ 0.47
COL4A1-204ENST00000543140 CASP4P49662 377 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms