RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 LOXHD1Q8IVV2 1947 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 ATG7O95352 703 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 PSAPP07602 524 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 HOXC6P09630 235 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 CYP11B2P19099 503 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 UBA1P22314 1058 aaKnown RBP19.77■□□□□ 0.76
CLIP1-215ENST00000541108 ERCC5P28715 1186 aaPredicted RBP19.77■□□□□ 0.76
CLIP1-215ENST00000541108 EEPD1Q7L9B9 569 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 LUZP1Q86V48 1076 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 BANK1Q8NDB2 785 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 DNAJC19Q96DA6 116 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 MAML3Q96JK9 1138 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 BHMT2Q9H2M3 363 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 VTA1Q9NP79 307 aa19.77■□□□□ 0.76
CLIP1-215ENST00000541108 WRAP73Q9P2S5 460 aaPredicted RBP19.77■□□□□ 0.76
CLIP1-215ENST00000541108 SMTNL1A8MU46 457 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 BECN2A8MW95 431 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 IKBKBO14920 756 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 SSBP05455 408 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLIP1-215ENST00000541108 ACTR2P61160 394 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 PSMD2Q13200 908 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 ABHD15Q6UXT9 468 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 CYFIP1Q7L576 1253 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 GPBP1Q86WP2 473 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 SCFD2Q8WU76 684 aa19.76■□□□□ 0.75
CLIP1-215ENST00000541108 DBR1Q9UK59 544 aaKnown RBP19.76■□□□□ 0.75
CLIP1-215ENST00000541108 SYNGAP1Q96PV0 1343 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 FARP2O94887 1054 aaPredicted RBP19.75■□□□□ 0.75
CLIP1-215ENST00000541108 MAP2K5Q13163 448 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 IRF5Q13568 498 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 TTLL4Q14679 1199 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 MIS18BP1Q6P0N0 1132 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 CCDC62Q6P9F0 684 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 METTL7BQ6UX53 244 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 DYMQ7RTS9 669 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 DHX40Q8IX18 779 aaKnown RBP19.75■□□□□ 0.75
CLIP1-215ENST00000541108 PIGOQ8TEQ8 1089 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 ATP6V0A1Q93050 837 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 BCAS3Q9H6U6 928 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 EXOC1Q9NV70 894 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 MCM3APO60318 1980 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 GOLGA6L19H0YKK7 550 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 PPP1R2P41236 205 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 ARSHQ5FYA8 562 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 SOCS4Q8WXH5 440 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 ANP32BQ92688 251 aaKnown RBP19.75■□□□□ 0.75
CLIP1-215ENST00000541108 USP6NLQ92738 828 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 TINF2Q9BSI4 451 aa19.75■□□□□ 0.75
CLIP1-215ENST00000541108 RBM47A0AV96 593 aaKnown RBP19.74■□□□□ 0.75
CLIP1-215ENST00000541108 PPP1R3GB7ZBB8 358 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 AOC2O75106 756 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 DEKP35659 375 aaKnown RBP19.74■□□□□ 0.75
CLIP1-215ENST00000541108 MAP2K2P36507 400 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 EHHADHQ08426 723 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 COBLL1Q53SF7 1204 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 RINT1Q6NUQ1 792 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 FBXO16Q8IX29 292 aaPredicted RBP19.74■□□□□ 0.75
CLIP1-215ENST00000541108 CCDC65Q8IXS2 484 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 CFHR5Q9BXR6 569 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 ABHD16BQ9H3Z7 469 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 MLXIPQ9HAP2 919 aa19.74■□□□□ 0.75
CLIP1-215ENST00000541108 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.74■□□□□ 0.75
CLIP1-215ENST00000541108 FRMD3A2A2Y4 597 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 GGPS1O95749 300 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 SNAI1O95863 264 aaPredicted RBP19.73■□□□□ 0.75
CLIP1-215ENST00000541108 KRT18P05783 430 aaKnown RBP19.73■□□□□ 0.75
CLIP1-215ENST00000541108 SUPT20HL2P0C7V6 817 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 YWHABP31946 246 aaKnown RBP19.73■□□□□ 0.75
CLIP1-215ENST00000541108 LY6KQ17RY6 165 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 CELF3Q5SZQ8 465 aaKnown RBP19.73■□□□□ 0.75
CLIP1-215ENST00000541108 TAPT1Q6NXT6 567 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 NPLOC4Q8TAT6 608 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 ENOX1Q8TC92 643 aaKnown RBP19.73■□□□□ 0.75
CLIP1-215ENST00000541108 ANKEF1Q9NU02 776 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 DOCK3Q8IZD9 2030 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 DOCK5Q9H7D0 1870 aa19.73■□□□□ 0.75
CLIP1-215ENST00000541108 WDR81Q562E7 1941 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 IGKV6D-21A0A0A0MT36 114 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 TNPO2O14787 897 aaKnown RBP19.72■□□□□ 0.75
CLIP1-215ENST00000541108 ZBTB39O15060 712 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 ARIH2O95376 493 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 TXNP10599 105 aaKnown RBP19.72■□□□□ 0.75
CLIP1-215ENST00000541108 IDEP14735 1019 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 MYL5Q02045 173 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 STIM1Q13586 685 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 GIT2Q14161 759 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 SWSAP1Q6NVH7 229 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 C1orf186Q6ZWK4 172 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 OTUD6AQ7L8S5 288 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 AOPEPQ8N6M6 819 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 SEPT1Q8WYJ6 367 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 KATNBL1Q9H079 304 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 PANK4Q9NVE7 773 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 GABBR1Q9UBS5 961 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 GJD2Q9UKL4 321 aa19.72■□□□□ 0.75
CLIP1-215ENST00000541108 MAFBQ9Y5Q3 323 aaPredicted RBP19.72■□□□□ 0.75
CLIP1-215ENST00000541108 CD44P16070 742 aaKnown RBP19.71■□□□□ 0.75
CLIP1-215ENST00000541108 RGS2P41220 211 aa19.71■□□□□ 0.75
CLIP1-215ENST00000541108 TPM4P67936 248 aa19.71■□□□□ 0.75
CLIP1-215ENST00000541108 NCAPHQ15003 741 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms