RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PRLRP16471 622 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 RPL13P26373 211 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 HSPA9P38646 679 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 NFRKBQ6P4R8 1299 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 WDR59Q6PJI9 974 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 C15orf52Q6ZUT6 534 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 CACNA2D4Q7Z3S7 1137 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 WHAMMQ8TF30 809 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ZC3H12CQ9C0D7 883 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ECT2Q9H8V3 914 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ABCF3Q9NUQ8 709 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 PIM2Q9P1W9 311 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 STK38LQ9Y2H1 464 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 MYH10P35580 1976 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 TTC26A0AVF1 554 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 H0YGN5 161 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 IDH1O75874 414 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 UBOX5O94941 541 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 GNAZP19086 355 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 MSH2P43246 934 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 LACTBP83111 547 aaPredicted RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ATP11AP98196 1134 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ZNF844Q08AG5 666 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 KIF2BQ8N4N8 673 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 CASKIN2Q8WXE0 1202 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 XPO6Q96QU8 1125 aaKnown RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 CD209Q9NNX6 404 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ABCF2Q9UG63 623 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 SUN2Q9UH99 717 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 ZMYND8Q9ULU4 1186 aaPredicted RBP10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 CD2APQ9Y5K6 639 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 NFS1Q9Y697 457 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 SLX4Q8IY92 1834 aa10.34□□□□□ -0.75
CTNNA1-243ENST00000540387 MBD4O95243 580 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 PAFAH1B1P43034 410 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 COPB1P53618 953 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 WASHC4Q2M389 1173 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 CMPK2Q5EBM0 449 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 ERMARDQ5T6L9 678 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 CHADLQ6NUI6 762 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 PIGWQ7Z7B1 504 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 PROCA1Q8NCQ7 364 aaPredicted RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 SPATA20Q8TB22 786 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 DYDC1Q8WWB3 177 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 ZNF317Q96PQ6 595 aaPredicted RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 DNAJC7Q99615 494 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 GPHNQ9NQX3 736 aaPredicted RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 TAB2Q9NYJ8 693 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 LIMA1Q9UHB6 759 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 DENND2AQ9ULE3 1009 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 TMCO1Q9UM00 188 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 NOVA2Q9UNW9 492 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 BZW2Q9Y6E2 419 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 ASAP2O43150 1006 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 HIP1RO75146 1068 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 FLOT1O75955 427 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 TCP1P17987 556 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 HSD17B3P37058 310 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 MAGOHP61326 146 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 PABPC4Q13310 644 aaKnown RBP eCLIP10.33□□□□□ -0.762e-8■■□□□ 13.2
CTNNA1-243ENST00000540387 TTF1Q15361 905 aaPredicted RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 TRADDQ15628 312 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 AGBL2Q5U5Z8 902 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 RUFY4Q6ZNE9 571 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 ZNF804AQ7Z570 1209 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 LONP2Q86WA8 852 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 ARL10Q8N8L6 244 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 KRI1Q8N9T8 703 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 NLGN2Q8NFZ4 835 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 MAGOHBQ96A72 148 aaKnown RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 KLHL29Q96CT2 875 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 FAM129AQ9BZQ8 928 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 VCXQ9H320 206 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 INCENPQ9NQS7 918 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 NKX1-2Q9UD57 310 aaPredicted RBP10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 HYOU1Q9Y4L1 999 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 CAPN6Q9Y6Q1 641 aa10.33□□□□□ -0.76
CTNNA1-243ENST00000540387 RNF113AO15541 343 aaKnown RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 CTNND1O60716 968 aaKnown RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 COBLO75128 1261 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 BPIFB4P59827 614 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 DOK7Q18PE1 504 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 SMYD4Q8IYR2 804 aaPredicted RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 MDM1Q8TC05 714 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 LUC7L2Q9Y383 392 aaKnown RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 COL1A1P02452 1464 aaPredicted RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 E7EWF7 191 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 TACC1O75410 805 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 FAM200BP0CF97 657 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 CYLC1P35663 651 aaPredicted RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 GRIN1Q05586 938 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 KIF5AQ12840 1032 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 UAP1Q16222 522 aaPredicted RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 TSR1Q2NL82 804 aaKnown RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 DALRD3Q5D0E6 543 aaKnown RBP10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 C17orf50Q8WW18 174 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 AIFM3Q96NN9 605 aa10.32□□□□□ -0.76
CTNNA1-243ENST00000540387 ARHGEF3Q9NR81 526 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms