RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ANKS4BQ8N8V4 417 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 ACRBPQ8NEB7 543 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 CUL5Q93034 780 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 DTNBP1Q96EV8 351 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 CYFIP2Q96F07 1278 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 KAZALD1Q96I82 304 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 SUCLG2Q96I99 432 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 ALS2CR12Q96Q35 445 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 SPAG5Q96R06 1193 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 SEC62Q99442 399 aaKnown RBP7.39□□□□□ -1.23
USP28-207ENST00000538475 SLF1Q9BQI6 1058 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 PLEKHA4Q9H4M7 779 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 PAG1Q9NWQ8 432 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 NOP53Q9NZM5 478 aaKnown RBP7.39□□□□□ -1.23
USP28-207ENST00000538475 TPX2Q9ULW0 747 aaKnown RBP7.39□□□□□ -1.23
USP28-207ENST00000538475 GUCA1BQ9UMX6 200 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 ANGEL1Q9UNK9 670 aaKnown RBP7.39□□□□□ -1.23
USP28-207ENST00000538475 SAMM50Q9Y512 469 aa7.39□□□□□ -1.23
USP28-207ENST00000538475 DLEC1Q9Y238 1755 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 TIAM2Q8IVF5 1701 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 LGALS16A8MUM7 142 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 E7ENQ6 273 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 PDLIM1O00151 329 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 POLR2DO15514 142 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 PJA2O43164 708 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 TRAPPC3O43617 180 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 SIN3BO75182 1162 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 FLOT1O75955 427 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 ATP1A1P05023 1023 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 ALADP13716 330 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 IDEP14735 1019 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 EPB42P16452 691 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 FERP16591 822 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 PAX7P23759 505 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 CCND1P24385 295 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 GCKP35557 465 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 IARSP41252 1262 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 RFX5P48382 616 aaPredicted RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 SH3BGRP55822 239 aaPredicted RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 KCNQ4P56696 695 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 IFT88Q13099 833 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 ITGB3BPQ13352 177 aaPredicted RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 PDCLQ13371 301 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 CUL1Q13616 776 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 NAA25Q14CX7 972 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 KRT31Q15323 416 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 SPA17Q15506 151 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 IFI16Q16666 785 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 SLC5A9Q2M3M2 681 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 CFAP221Q4G0U5 840 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 TCP11X2Q5H9J9 407 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 TMEM164Q5U3C3 297 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 IER5Q5VY09 327 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 CEP57Q86XR8 500 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 CREG2Q8IUH2 290 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 FAM114A1Q8IWE2 563 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 GBP7Q8N8V2 638 aaPredicted RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 SPATA4Q8NEY3 305 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 RASSF8Q8NHQ8 419 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 RIN2Q8WYP3 895 aaPredicted RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 BHMTQ93088 406 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 ZIM3Q96PE6 472 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 PNMA5Q96PV4 448 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 MED15Q96RN5 788 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 LRRC2Q9BYS8 371 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 THAP9Q9H5L6 903 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 QTRT2Q9H974 415 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 TMBIM4Q9HC24 238 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 LUC7LQ9NQ29 371 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 C15orf41Q9Y2V0 281 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 REXO2Q9Y3B8 237 aaKnown RBP7.38□□□□□ -1.23
USP28-207ENST00000538475 RREB1Q92766 1687 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 LRP6O75581 1613 aa7.38□□□□□ -1.23
USP28-207ENST00000538475 C1orf167Q5SNV9 1468 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ATRNO75882 1429 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 MYH3P11055 1940 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 CCDC88AQ3V6T2 1871 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ABCB11O95342 1321 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 PDS5AQ29RF7 1337 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 DOCK2Q92608 1830 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ELOA3CA0A087WX78 387 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 ELOA3DA6NLF2 546 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 ASAP2O43150 1006 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 PPIP5K2O43314 1243 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 CIAO1O76071 339 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ATP6V1G2O95670 118 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 MMP1P03956 469 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 IFNAR1P17181 557 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 IL15P40933 162 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 METAP2P50579 478 aaKnown RBP eCLIP7.37□□□□□ -1.23
USP28-207ENST00000538475 EIF3BP55884 814 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 HERVK_113P62684 666 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 PTPN12Q05209 780 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 SSRP1Q08945 709 aaKnown RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 PAK1Q13153 545 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 ZNF268Q14587 947 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 ALX1Q15699 326 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 CDC37Q16543 378 aaPredicted RBP7.37□□□□□ -1.23
USP28-207ENST00000538475 ELOA3BQ3SY89 546 aa7.37□□□□□ -1.23
USP28-207ENST00000538475 CCDC181Q5TID7 509 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms