RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ERAP1Q9NZ08 941 aa13.59□□□□□ -0.23
CHD4-203ENST00000535717 ZDHHC9Q9Y397 364 aa13.59□□□□□ -0.23
CHD4-203ENST00000535717 F13A1P00488 732 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 ATP4AP20648 1035 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 MLLT1Q03111 559 aaPredicted RBP13.58□□□□□ -0.24
CHD4-203ENST00000535717 PTPN11Q06124 597 aaPredicted RBP13.58□□□□□ -0.24
CHD4-203ENST00000535717 HIC1Q14526 733 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 UGCGQ16739 394 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 FAM47CQ5HY64 1035 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 FAM160B1Q5W0V3 765 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 NCAPH2Q6IBW4 605 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 PDXDC2PQ6P474 469 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 SESTD1Q86VW0 696 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 FAM126BQ8IXS8 530 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 C7orf31Q8N865 590 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 TOX2Q96NM4 488 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 FTOQ9C0B1 505 aaKnown RBP eCLIP13.58□□□□□ -0.24
CHD4-203ENST00000535717 TRPV6Q9H1D0 765 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 HDAC6Q9UBN7 1215 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 GABBR1Q9UBS5 961 aa13.58□□□□□ -0.24
CHD4-203ENST00000535717 MAFBQ9Y5Q3 323 aaPredicted RBP13.58□□□□□ -0.24
CHD4-203ENST00000535717 LAD1O00515 517 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 EVI5O60447 810 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 B4GALT4O60513 344 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 BRD1O95696 1058 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 CD4P01730 458 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 SMIM10L2AP0DMW4 78 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 SMIM10L2BP0DMW5 78 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 DDIT3P35638 169 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 PRPHP41219 470 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 TECP42680 631 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 SLC26A2P50443 739 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 ATP2C1P98194 919 aaPredicted RBP13.57□□□□□ -0.24
CHD4-203ENST00000535717 FAAP100Q0VG06 881 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 PLCB4Q15147 1175 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 EPHA7Q15375 998 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 SF3A1Q15459 793 aaKnown RBP13.57□□□□□ -0.24
CHD4-203ENST00000535717 IL17AQ16552 155 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 GDF6Q6KF10 455 aaPredicted RBP13.57□□□□□ -0.24
CHD4-203ENST00000535717 C7orf61Q8IZ16 206 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 TRMT13Q9NUP7 481 aaKnown RBP13.57□□□□□ -0.24
CHD4-203ENST00000535717 GTF2IRD1Q9UHL9 959 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 CLIC4Q9Y696 253 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 CEP290O15078 2479 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 MROH7Q68CQ1 1323 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 IGSF9BQ9UPX0 1349 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 PDE4DIPQ5VU43 2346 aa13.57□□□□□ -0.24
CHD4-203ENST00000535717 WDR81Q562E7 1941 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 POTEMA6NI47 508 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 DCDC2CA8MYV0 355 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 ZNF862O60290 1169 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 HOXC8P31273 242 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 FXR2P51116 673 aaKnown RBP eCLIP13.56□□□□□ -0.245e-12■■□□□ 12.8
CHD4-203ENST00000535717 ZNF200P98182 395 aaPredicted RBP13.56□□□□□ -0.24
CHD4-203ENST00000535717 BANK1Q8NDB2 785 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 ATP8B4Q8TF62 1192 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 CTAGE1Q96RT6 745 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 USP28Q96RU2 1077 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 SETD4Q9NVD3 440 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 RGL1Q9NZL6 768 aa13.56□□□□□ -0.24
CHD4-203ENST00000535717 MYH9P35579 1960 aaKnown RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 POTEB3A0JP26 581 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 C17orf102A2RUQ5 167 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 TLR3O15455 904 aaKnown RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 BMP15O95972 392 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 CLTBP09497 229 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 INSRRP14616 1297 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 PRKCEQ02156 737 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 CEBPZQ03701 1054 aaKnown RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 PPFIA1Q13136 1202 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 PTPAQ15257 358 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 PTGISQ16647 500 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 TMEM266Q2M3C6 531 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 FOXD4L6Q3SYB3 417 aaPredicted RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 FOXD4L3Q6VB84 417 aaPredicted RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 DTHD1Q6ZMT9 781 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 SH3RF1Q7Z6J0 888 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 CKAP2LQ8IYA6 745 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 LMBR1Q8WVP7 490 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 ATP6V0A1Q93050 837 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 DYDC2Q96IM9 177 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 HSD17B14Q9BPX1 270 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 EIF2AK1Q9BQI3 630 aaKnown RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 PDLIM7Q9NR12 457 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 WRAP73Q9P2S5 460 aaPredicted RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 TFIP11Q9UBB9 837 aaKnown RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
CHD4-203ENST00000535717 CEP131Q9UPN4 1083 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 TRPC6Q9Y210 931 aa13.55□□□□□ -0.24
CHD4-203ENST00000535717 TRIM43BA6NCK2 446 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 SLITRK3O94933 977 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 STBD1O95210 358 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 OATP04181 439 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 P4HBP07237 508 aaKnown RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 CYP2C9P11712 490 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 PRKCSHP14314 528 aaPredicted RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 QARSP47897 775 aaKnown RBP13.54□□□□□ -0.24
CHD4-203ENST00000535717 PSMC5P62195 406 aa13.54□□□□□ -0.24
CHD4-203ENST00000535717 ADAM17P78536 824 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms