RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	DBP	Q10586	325 aa	Predicted RBP	4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ARHGAP44	Q17R89	818 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	PRR31	Q5SQ13	230 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ZFYVE27	Q5T4F4	411 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	HHIPL2	Q6UWX4	724 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	KLHL36	Q8N4N3	616 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	SLC7A14	Q8TBB6	771 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	APPBP2	Q92624	585 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	BDH2	Q9BUT1	245 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ADAM7	Q9H2U9	754 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	KCNH7	Q9NS40	1196 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	TMEM260	Q9NX78	707 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	CNOT11	Q9UKZ1	510 aa	Known RBP	4.1	□□□□□ -1.75
CD44-238	ENST00000534296	CBLC	Q9ULV8	474 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	COQ6	Q9Y2Z9	468 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF536	O15090	1300 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296		B8ZZF3	427 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	SCD	O00767	359 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	FOXD2	O60548	495 aa	Predicted RBP	4.09	□□□□□ -1.75
CD44-238	ENST00000534296	RAPGEF3	O95398	923 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	PTGS1	P23219	599 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	PLP2	Q04941	152 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	TMEM177	Q53S58	311 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	RALYL	Q86SE5	291 aa	Known RBP	4.09	□□□□□ -1.75
CD44-238	ENST00000534296	REXO1L1P	Q8IX06	675 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	IGSF22	Q8N9C0	903 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	HIPK4	Q8NE63	616 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	SH3RF2	Q8TEC5	729 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	DDX1	Q92499	740 aa	Known RBP	4.09	□□□□□ -1.75
CD44-238	ENST00000534296	E2F7	Q96AV8	911 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	YTHDC1	Q96MU7	727 aa	Known RBP	4.09	□□□□□ -1.75
CD44-238	ENST00000534296	SYT3	Q9BQG1	590 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	BOC	Q9BWV1	1114 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	PCIF1	Q9H4Z3	704 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	TRIM39	Q9HCM9	518 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	JADE2	Q9NQC1	790 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	FBXO10	Q9UK96	956 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	TELO2	Q9Y4R8	837 aa		4.09	□□□□□ -1.75
CD44-238	ENST00000534296	TCRBV5S4A2T	A0A5A2	114 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296		K7ESM1	405 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	CUTA	O60888	179 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	CDC45	O75419	566 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	RFPL3	O75679	317 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	ASMTL	O95671	621 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	AMY2A	P04746	511 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	AMY2B	P19961	511 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	MLLT6	P55198	1093 aa	Predicted RBP	4.08	□□□□□ -1.76
CD44-238	ENST00000534296	IRF9	Q00978	393 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	NFATC3	Q12968	1075 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	RTP5	Q14D33	572 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	WDR72	Q3MJ13	1102 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	ZCCHC8	Q6NZY4	707 aa	Known RBP	4.08	□□□□□ -1.76
CD44-238	ENST00000534296	PKN3	Q6P5Z2	889 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	ARHGEF18	Q6ZSZ5	1173 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	PROSER1	Q86XN7	944 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	STPG3	Q8N7X2	389 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	CALML6	Q8TD86	181 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	ZCCHC14	Q8WYQ9	949 aa	Known RBP	4.08	□□□□□ -1.76
CD44-238	ENST00000534296	BORCS6	Q96GS4	357 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	TACO1	Q9BSH4	297 aa	Known RBP	4.08	□□□□□ -1.76
CD44-238	ENST00000534296	SMURF1	Q9HCE7	757 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	SLC39A2	Q9NP94	309 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	INCENP	Q9NQS7	918 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	SAMD15	Q9P1V8	674 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	MAGEC2	Q9UBF1	373 aa	Predicted RBP	4.08	□□□□□ -1.76
CD44-238	ENST00000534296	RBPJL	Q9UBG7	517 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	ZDHHC9	Q9Y397	364 aa		4.08	□□□□□ -1.76
CD44-238	ENST00000534296	FAM90A27P	A6NNH2	459 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296		H7C1D1	291 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	ACOT7	O00154	380 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	FOXP2	O15409	715 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	LAMTOR5	O43504	91 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	PLAT	P00750	562 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	KNG1	P01042	644 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	AOAH	P28039	575 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	MAP3K12	Q12852	859 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	SQSTM1	Q13501	440 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	ZNF174	Q15697	407 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	ZNF827	Q17R98	1081 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	LCE4A	Q5TA78	99 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	CPZ	Q66K79	652 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	GLB1L	Q6UWU2	654 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296		Q6ZUG5	572 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	C16orf86	Q6ZW13	317 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	CXXC5	Q7LFL8	322 aa	Known RBP	4.07	□□□□□ -1.76
CD44-238	ENST00000534296	OTOP2	Q7RTS6	562 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	OVCH1	Q7RTY7	1134 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	FGD2	Q7Z6J4	655 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	FERMT3	Q86UX7	667 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	KBTBD2	Q8IY47	623 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	CHST14	Q8NCH0	376 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	SCLY	Q96I15	445 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	C20orf173	Q96LM9	149 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	KRTAP4-2	Q9BYR5	136 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	KCND1	Q9NSA2	647 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	INTS7	Q9NVH2	962 aa	Known RBP	4.07	□□□□□ -1.76
CD44-238	ENST00000534296	GALNT8	Q9NY28	637 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	INVS	Q9Y283	1065 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	ASB1	Q9Y576	335 aa		4.07	□□□□□ -1.76
CD44-238	ENST00000534296	NCAN	O14594	1321 aa		4.06	□□□□□ -1.76

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