RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 AP3B2Q13367 1082 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 CEP55Q53EZ4 464 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 MARCH8Q5T0T0 291 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 RSPH3Q86UC2 560 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 YME1L1Q96TA2 773 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 PCYT2Q99447 389 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 SDF4Q9BRK5 362 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 C17orf80Q9BSJ5 609 aa19.22■□□□□ 0.67
CPSF1-207ENST00000531727 RRN3P2A6NIE6 340 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 ARP10275 920 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 KCNQ1P51787 676 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 FGD1P98174 961 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 FBXO22Q8NEZ5 403 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 HLA-CQ95604 372 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 SAMD11Q96NU1 681 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 AZI2Q9H6S1 392 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 AGO4Q9HCK5 861 aaKnown RBP19.21■□□□□ 0.67
CPSF1-207ENST00000531727 TMEM260Q9NX78 707 aa19.21■□□□□ 0.67
CPSF1-207ENST00000531727 NAP1L2Q9ULW6 460 aaPredicted RBP19.21■□□□□ 0.67
CPSF1-207ENST00000531727 CCDC196A0A1B0GTZ2 297 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 MEIS1O00470 390 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 UPP2O95045 317 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 GHRP10912 638 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 INSRRP14616 1297 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 CPA1P15085 419 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 ADD1P35611 737 aaKnown RBP19.2■□□□□ 0.66
CPSF1-207ENST00000531727 METAP2P50579 478 aaKnown RBP eCLIP19.2■□□□□ 0.668e-13■□□□□ 10.8
CPSF1-207ENST00000531727 ACTR2P61160 394 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 IGBP1P78318 339 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 APOBRQ0VD83 1088 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 ITGB3BPQ13352 177 aaPredicted RBP19.2■□□□□ 0.66
CPSF1-207ENST00000531727 DNAJB3Q8WWF6 145 aa19.2■□□□□ 0.66
CPSF1-207ENST00000531727 TNPO1Q92973 898 aaKnown RBP19.2■□□□□ 0.66
CPSF1-207ENST00000531727 TCF20Q9UGU0 1960 aaKnown RBP19.2■□□□□ 0.66
CPSF1-207ENST00000531727 NID2Q14112 1375 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 RPLP2P05387 115 aaKnown RBP19.19■□□□□ 0.66
CPSF1-207ENST00000531727 HSPA4P34932 840 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 LPIN1Q14693 890 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 PFKFB3Q16875 520 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-207ENST00000531727 EPC2Q52LR7 807 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 Q6ZUG5 572 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 NIPA1Q7RTP0 329 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 PLPPR4Q7Z2D5 763 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 JAKMIP1Q96N16 626 aaKnown RBP19.19■□□□□ 0.66
CPSF1-207ENST00000531727 SNX14Q9Y5W7 946 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 CDY2AQ9Y6F7 541 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 RALGAPA2Q2PPJ7 1873 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 NLRC5Q86WI3 1866 aa19.19■□□□□ 0.66
CPSF1-207ENST00000531727 TTC28Q96AY4 2481 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 ATG7O95352 703 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 SCG2P13521 617 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 ZNF76P36508 570 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 MRPS6P82932 125 aaKnown RBP19.18■□□□□ 0.66
CPSF1-207ENST00000531727 PLCB4Q15147 1175 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 FBXO47Q5MNV8 452 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 BLOC1S2Q6QNY1 142 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 TSHZ1Q6ZSZ6 1077 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 BRF1Q92994 677 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 ZBTB10Q96DT7 871 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 NECAB3Q96P71 396 aaPredicted RBP19.18■□□□□ 0.66
CPSF1-207ENST00000531727 TRPC6Q9Y210 931 aa19.18■□□□□ 0.66
CPSF1-207ENST00000531727 ESYT2A0FGR8 921 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 STAT5BP51692 787 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 JAKMIP3Q5VZ66 844 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 FBXL16Q8N461 479 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 CCDC136Q96JN2 1154 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 ZMYND12Q9H0C1 365 aa19.17■□□□□ 0.66
CPSF1-207ENST00000531727 FAM49AQ9H0Q0 323 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-207ENST00000531727 FAM86B1E9PN63 330 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 FAM86B2P0C5J1 330 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 RPS6KB1P23443 525 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 SLC26A2P50443 739 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 IER5Q5VY09 327 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 MCTP2Q6DN12 878 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 TMEM192Q8IY95 271 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 CCDC12Q8WUD4 166 aaPredicted RBP19.16■□□□□ 0.66
CPSF1-207ENST00000531727 TRAPPC12Q8WVT3 735 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 CRYGNQ8WXF5 182 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 MRPL38Q96DV4 380 aaKnown RBP19.16■□□□□ 0.66
CPSF1-207ENST00000531727 IL17RAQ96F46 866 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 PCDHA2Q9Y5H9 948 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 SQORQ9Y6N5 450 aa19.16■□□□□ 0.66
CPSF1-207ENST00000531727 IGLV3-22A0A075B6J6 115 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 IGKV6D-21A0A0A0MT36 114 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 POTEB3A0JP26 581 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 H3BNC9 293 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 ENPP3O14638 875 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 PRPF3O43395 683 aaKnown RBP19.15■□□□□ 0.66
CPSF1-207ENST00000531727 CCNE2O96020 404 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 CYP3A4P08684 503 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 GPM6BQ13491 265 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 PKN1Q16512 942 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 PTPROQ16827 1216 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 POTEBQ6S5H4 581 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 ABHD15Q6UXT9 468 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 PLA2G4DQ86XP0 818 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 AGXT2Q9BYV1 514 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 C6orf50Q9HD87 102 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 TRPV2Q9Y5S1 764 aa19.15■□□□□ 0.66
CPSF1-207ENST00000531727 M0QZ92 97 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms