RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ZNF577Q9BSK1 485 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 TCEAL9Q9UHQ7 104 aa15.14■□□□□ 0.01
VPS28-211ENST00000530790 IGLV3-22A0A075B6J6 115 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 IPO5O00410 1097 aaKnown RBP15.13■□□□□ 0.01
VPS28-211ENST00000530790 ADAMTS3O15072 1205 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 NLRP5P59047 1200 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 IGBP1P78318 339 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 RUFY4Q6ZNE9 571 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 DBF4BQ8NFT6 615 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 SEPT8Q92599 483 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 ZBED2Q9BTP6 218 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 TET1Q8NFU7 2136 aa15.13■□□□□ 0.01
VPS28-211ENST00000530790 UNC80Q8N2C7 3258 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 MBLAC1A4D2B0 266 aaPredicted RBP15.12■□□□□ 0.01
VPS28-211ENST00000530790 BACH1O14867 736 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 CDKL5O76039 1030 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 CCNE2O96020 404 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 AMHP03971 560 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 RPLP2P05387 115 aaKnown RBP15.12■□□□□ 0.01
VPS28-211ENST00000530790 IGFBP4P22692 258 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 SLC26A2P50443 739 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 STAT5BP51692 787 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 PLEKHG4Q58EX7 1191 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 FAM160B1Q5W0V3 765 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 PLPPR4Q7Z2D5 763 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 TMCO2Q7Z6W1 182 aaPredicted RBP15.12■□□□□ 0.01
VPS28-211ENST00000530790 RPAINQ86UA6 219 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 CHD7Q9P2D1 2997 aa15.12■□□□□ 0.01
VPS28-211ENST00000530790 RRN3P2A6NIE6 340 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 ATG7O95352 703 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 GJB5O95377 273 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 INSRRP14616 1297 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 CIITAP33076 1130 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 PLCB4Q15147 1175 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 ANKRD1Q15327 319 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 PRR16Q569H4 304 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 FAM26DQ5JW98 314 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 MIS18BP1Q6P0N0 1132 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 FAM177A1Q8N128 213 aaPredicted RBP15.11■□□□□ 0.01
VPS28-211ENST00000530790 APBB2Q92870 758 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 C22orf23Q9BZE7 217 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 SLKQ9H2G2 1235 aaPredicted RBP15.11■□□□□ 0.01
VPS28-211ENST00000530790 TBC1D22BQ9NU19 505 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 PCDHA4Q9UN74 947 aa15.11■□□□□ 0.01
VPS28-211ENST00000530790 PTPRSQ13332 1948 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 POTEB3A0JP26 581 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 GHRP10912 638 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 KRT76Q01546 638 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 TAP1Q03518 808 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 SCRN1Q12765 414 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 MKRN4PQ13434 485 aaPredicted RBP15.1■□□□□ 0.01
VPS28-211ENST00000530790 ADGRE1Q14246 886 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 MARCH8Q5T0T0 291 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 FAM117BQ6P1L5 589 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 POTEBQ6S5H4 581 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 SMAP1Q8IYB5 467 aaPredicted RBP15.1■□□□□ 0.01
VPS28-211ENST00000530790 MYOCDQ8IZQ8 938 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 DNAJB3Q8WWF6 145 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 UIMC1Q96RL1 719 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 RAD9AQ99638 391 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 IFIH1Q9BYX4 1025 aaKnown RBP15.1■□□□□ 0.01
VPS28-211ENST00000530790 FAM49AQ9H0Q0 323 aaPredicted RBP15.1■□□□□ 0.01
VPS28-211ENST00000530790 ZNF302Q9NR11 478 aa15.1■□□□□ 0.01
VPS28-211ENST00000530790 IGKV6D-21A0A0A0MT36 114 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 M0QZ92 97 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 DHX15O43143 795 aaKnown RBP15.09■□□□□ 0.01
VPS28-211ENST00000530790 ARHGEF15O94989 841 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 MGAT3Q09327 533 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 GALNT17Q6IS24 598 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 ZNF746Q6NUN9 644 aaPredicted RBP15.09■□□□□ 0.01
VPS28-211ENST00000530790 PDXDC2PQ6P474 469 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 ABHD15Q6UXT9 468 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS28-211ENST00000530790 CCDC60Q8IWA6 550 aaPredicted RBP15.09■□□□□ 0.01
VPS28-211ENST00000530790 BLIDQ8IZY5 108 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 USP38Q8NB14 1042 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 DAGLBQ8NCG7 672 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 TRAPPC12Q8WVT3 735 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 PPM1EQ8WY54 764 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 ARNTL2Q8WYA1 636 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 LENG9Q96B70 501 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 AIFM3Q96NN9 605 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 CERS4Q9HA82 394 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 TPCN1Q9ULQ1 816 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 STK36Q9NRP7 1315 aa15.09■□□□□ 0.01
VPS28-211ENST00000530790 PRUNE2Q8WUY3 3088 aa15.08■□□□□ 0
VPS28-211ENST00000530790 LCHNA4D1U4 455 aa15.08■□□□□ 0
VPS28-211ENST00000530790 RBAK-RBAKDNI3L0D1 243 aa15.08■□□□□ 0
VPS28-211ENST00000530790 PFKFB2O60825 505 aa15.08■□□□□ 0
VPS28-211ENST00000530790 CHRNA1P02708 482 aa15.08■□□□□ 0
VPS28-211ENST00000530790 PSAPP07602 524 aa15.08■□□□□ 0
VPS28-211ENST00000530790 XBP1P17861 261 aa15.08■□□□□ 0
VPS28-211ENST00000530790 USP11P51784 963 aa15.08■□□□□ 0
VPS28-211ENST00000530790 AK2P54819 239 aa15.08■□□□□ 0
VPS28-211ENST00000530790 MRPS6P82932 125 aaKnown RBP15.08■□□□□ 0
VPS28-211ENST00000530790 IER5Q5VY09 327 aa15.08■□□□□ 0
VPS28-211ENST00000530790 CKAP2LQ8IYA6 745 aa15.08■□□□□ 0
VPS28-211ENST00000530790 TBCKQ8TEA7 893 aa15.08■□□□□ 0
VPS28-211ENST00000530790 ATP8B4Q8TF62 1192 aa15.08■□□□□ 0
VPS28-211ENST00000530790 ZBTB10Q96DT7 871 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms