RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ZHX3Q9H4I2 956 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 ELP3Q9H9T3 547 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 NMRK2Q9NPI5 230 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 CYP39A1Q9NYL5 469 aa22.96■■□□□ 1.27
VPS28-209ENST00000528142 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.96■■□□□ 1.27
VPS28-209ENST00000528142 COL11A1P12107 1806 aaPredicted RBP22.95■■□□□ 1.27
VPS28-209ENST00000528142 RSPH10B2B2RC85 870 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 B4DLN1 442 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 TRAF5O00463 557 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 KIF20AO95235 890 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 NR3C2P08235 984 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 RSPH10BP0C881 870 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 PRKCSHP14314 528 aaPredicted RBP22.95■■□□□ 1.26
VPS28-209ENST00000528142 MTIF2P46199 727 aaKnown RBP22.95■■□□□ 1.26
VPS28-209ENST00000528142 TRIM14Q14142 442 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 LBX2Q6XYB7 198 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 EPM2AIP1Q7L775 607 aaPredicted RBP22.95■■□□□ 1.26
VPS28-209ENST00000528142 ERO1BQ86YB8 467 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 ANKRD13AQ8IZ07 590 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 CPLX3Q8WVH0 158 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 CLMNQ96JQ2 1002 aa22.95■■□□□ 1.26
VPS28-209ENST00000528142 A1CFQ9NQ94 594 aaKnown RBP22.95■■□□□ 1.26
VPS28-209ENST00000528142 A0A0G2JLL6 359 aaPredicted RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 IRF6O14896 467 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 NF2P35240 595 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 CASP5P51878 434 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 PRRT2Q7Z6L0 340 aaPredicted RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 CNGA4Q8IV77 575 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 BANK1Q8NDB2 785 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 NSUN6Q8TEA1 469 aaKnown RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 CCDC51Q96ER9 411 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 SPDYE5A6NIY4 337 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 RNF225M0QZC1 329 aaPredicted RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 ATP9AO75110 1047 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 P4HBP07237 508 aaKnown RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 FECHP22830 423 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 CCND2P30279 289 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 FKBP3Q00688 224 aaKnown RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 PLS1Q14651 629 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 PROCA1Q8NCQ7 364 aaPredicted RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 PPP1R13BQ96KQ4 1090 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 NOC4LQ9BVI4 516 aaKnown RBP22.94■■□□□ 1.26
VPS28-209ENST00000528142 COL4A3BPQ9Y5P4 624 aa22.94■■□□□ 1.26
VPS28-209ENST00000528142 CXCL11O14625 94 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 TPM2P07951 284 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 TNNT1P13805 278 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 NELFCDQ8IXH7 590 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 ZC3H3Q8IXZ2 948 aaKnown RBP22.93■■□□□ 1.26
VPS28-209ENST00000528142 GPRASP2Q96D09 838 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 OTUD5Q96G74 571 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 INPP4AQ96PE3 977 aaPredicted RBP22.93■■□□□ 1.26
VPS28-209ENST00000528142 BCAS3Q9H6U6 928 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 KCND2Q9NZV8 630 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 CLEC11AQ9Y240 323 aa22.93■■□□□ 1.26
VPS28-209ENST00000528142 TBCAO75347 108 aaKnown RBP22.92■■□□□ 1.26
VPS28-209ENST00000528142 GAP43P17677 238 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 CHST13Q8NET6 341 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 ZNF526Q8TF50 670 aaPredicted RBP22.92■■□□□ 1.26
VPS28-209ENST00000528142 CEP63Q96MT8 703 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 NAA15Q9BXJ9 866 aaKnown RBP22.92■■□□□ 1.26
VPS28-209ENST00000528142 ZSWIM4Q9H7M6 989 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 OLFML3Q9NRN5 406 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 TESPA1A2RU30 521 aaPredicted RBP22.92■■□□□ 1.26
VPS28-209ENST00000528142 LYPLA2O95372 231 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 TPM1P09493 284 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 HOXD13P35453 343 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 TBC1D8BQ0IIM8 1120 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 BMT2Q1RMZ1 405 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 BTBD7Q9P203 1132 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 KCNH4Q9UQ05 1017 aa22.92■■□□□ 1.26
VPS28-209ENST00000528142 PES1O00541 588 aaKnown RBP22.91■■□□□ 1.26
VPS28-209ENST00000528142 MAFGO15525 162 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 RGS20O76081 388 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 PTPN14Q15678 1187 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 EDRF1Q3B7T1 1238 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 VWA3BQ502W6 1294 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 PPP4R3CPQ6ZMV5 832 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 GADL1Q6ZQY3 521 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 ERGIC2Q96RQ1 377 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 POLD4Q9HCU8 107 aa22.91■■□□□ 1.26
VPS28-209ENST00000528142 RASSF10A6NK89 507 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 CCNE2O96020 404 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 MYBP10242 640 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 ZNF131P52739 623 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 MAN2A1Q16706 1144 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 KNOP1Q1ED39 458 aaKnown RBP22.9■■□□□ 1.26
VPS28-209ENST00000528142 NLRX1Q86UT6 975 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 PRIMPOLQ96LW4 560 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 TRAF3IP3Q9Y228 551 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 PTPRFP10586 1907 aa22.9■■□□□ 1.26
VPS28-209ENST00000528142 CCP110O43303 1012 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 GUCY2CP25092 1073 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 QARSP47897 775 aaKnown RBP22.89■■□□□ 1.26
VPS28-209ENST00000528142 RIOX2Q8IUF8 465 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 NDST4Q9H3R1 872 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 ABHD10Q9NUJ1 306 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 DBR1Q9UK59 544 aaKnown RBP22.89■■□□□ 1.26
VPS28-209ENST00000528142 ODF2LQ9ULJ1 636 aa22.89■■□□□ 1.26
VPS28-209ENST00000528142 TTC26A0AVF1 554 aa22.89■■□□□ 1.25
VPS28-209ENST00000528142 SFI1A8K8P3 1242 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms