RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PCDHA9Q9Y5H5 950 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 PCDHA8Q9Y5H6 950 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 MED1Q15648 1581 aaPredicted RBP9.41□□□□□ -0.9
SDCBP-208ENST00000520228 TULP4Q9NRJ4 1543 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 PXDNQ92626 1479 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 C22orf46C9J442 243 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 WNT9AO14904 365 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 SRGAP3O43295 1099 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 RIOX2Q8IUF8 465 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 FAM168AQ92567 244 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 NINJ1Q92982 152 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 BTG4Q9NY30 223 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 TRPM1Q7Z4N2 1603 aa9.4□□□□□ -0.9
SDCBP-208ENST00000520228 SBNO1A3KN83 1393 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 ACEP12821 1306 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 ST20-MTHFSA0A0A6YYL1 179 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 DNAJC8O75937 253 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-208ENST00000520228 TAL1P17542 331 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-208ENST00000520228 NAT1P18440 290 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 ARL4AP40617 200 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 GUCY1A3Q02108 690 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 TRMT2BQ96GJ1 504 aaKnown RBP9.39□□□□□ -0.91
SDCBP-208ENST00000520228 SLC6A17Q9H1V8 727 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 CLDND1Q9NY35 253 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 RGS17Q9UGC6 210 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-208ENST00000520228 PLAAQ9Y263 795 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.39□□□□□ -0.91
SDCBP-208ENST00000520228 FMN2Q9NZ56 1722 aa9.39□□□□□ -0.91
SDCBP-208ENST00000520228 TCRBV16S1A1N1A0A5B0 115 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 RASGRP1O95267 797 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 DBHP09172 617 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 SDSP20132 328 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 GRK2P25098 689 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 GRK3P35626 688 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 PAK1Q13153 545 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 C21orf62-AS1Q17RA5 79 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 MROH9Q5TGP6 573 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 BICRALQ6AI39 1079 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 MTDHQ86UE4 582 aaKnown RBP9.38□□□□□ -0.91
SDCBP-208ENST00000520228 IRF2BP1Q8IU81 584 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 PCDH19Q8TAB3 1148 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 CHAMP1Q96JM3 812 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 MAGEB10Q96LZ2 347 aaPredicted RBP9.38□□□□□ -0.91
SDCBP-208ENST00000520228 ARHGEF28Q8N1W1 1705 aaKnown RBP9.38□□□□□ -0.91
SDCBP-208ENST00000520228 ATP7BP35670 1465 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 LRP6O75581 1613 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 NHSL1Q5SYE7 1610 aa9.38□□□□□ -0.91
SDCBP-208ENST00000520228 ARHGEF10O15013 1369 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 SBNO2Q9Y2G9 1366 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 SOD2P04179 222 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 GYS2P54840 703 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 XP32Q5T750 250 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 ZNF772Q68DY9 489 aaPredicted RBP9.37□□□□□ -0.91
SDCBP-208ENST00000520228 WWC2Q6AWC2 1192 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 NETO2Q8NC67 525 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 ALG1Q9BT22 464 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 IPPKQ9H8X2 491 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 INTS7Q9NVH2 962 aaKnown RBP9.37□□□□□ -0.91
SDCBP-208ENST00000520228 TNS3Q68CZ2 1445 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 PPIP5K1Q6PFW1 1433 aa9.37□□□□□ -0.91
SDCBP-208ENST00000520228 POLR3AO14802 1390 aaPredicted RBP9.37□□□□□ -0.91
SDCBP-208ENST00000520228 A0A1W2PQJ5 194 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 NTRK1P04629 796 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 CYBBP04839 570 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 SDHBP21912 280 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 YBX1P67809 324 aaKnown RBP9.36□□□□□ -0.91
SDCBP-208ENST00000520228 ADGRF1Q5T601 910 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 PAQR3Q6TCH7 311 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 NIM1KQ8IY84 436 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 USP33Q8TEY7 942 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 LIN37Q96GY3 246 aaPredicted RBP9.36□□□□□ -0.91
SDCBP-208ENST00000520228 TESK2Q96S53 571 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 USP47Q96K76 1375 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 KIF1AQ12756 1690 aa9.36□□□□□ -0.91
SDCBP-208ENST00000520228 AFF2P51816 1311 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 USP32Q8NFA0 1604 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 LOC100996750A0A140TA64 210 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 FAM47E-STBD1D6RA91 191 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 MPOP05164 745 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 CKMP06732 381 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 TM4SF20Q53R12 229 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 HABP4Q5JVS0 413 aaKnown RBP9.35□□□□□ -0.91
SDCBP-208ENST00000520228 PUS7Q96PZ0 661 aaKnown RBP9.35□□□□□ -0.91
SDCBP-208ENST00000520228 JAM3Q9BX67 310 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 KRTAP4-6Q9BYQ5 205 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.35□□□□□ -0.91
SDCBP-208ENST00000520228 KLHL14Q9P2G3 628 aa9.35□□□□□ -0.91
SDCBP-208ENST00000520228 MAGEC2Q9UBF1 373 aaPredicted RBP9.35□□□□□ -0.91
SDCBP-208ENST00000520228 FAM83GA6ND36 823 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 OR14I1A6ND48 311 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 ASLP04424 464 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 SLC6A11P48066 632 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 TMF1P82094 1093 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 NR1I3Q14994 352 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 ABHD17CQ6PCB6 329 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 RPTNQ6XPR3 784 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 CABP7Q86V35 215 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.34□□□□□ -0.91
SDCBP-208ENST00000520228 EPB41L1Q9H4G0 881 aa9.34□□□□□ -0.91
SDCBP-208ENST00000520228 ZNF552Q9H707 407 aaPredicted RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms