RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 FAM83AQ86UY5 434 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 TTLL6Q8N841 843 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 CAGE1Q8TC20 777 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 SMCR8Q8TEV9 937 aaPredicted RBP16.36■□□□□ 0.21
NUP54-217ENST00000514987 SLC5A5Q92911 643 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 PNKPQ96T60 521 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 RHOXF2Q9BQY4 288 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 WDR11Q9BZH6 1224 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 VCPKMTQ9H867 229 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 PLCB1Q9NQ66 1216 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 TYW1Q9NV66 732 aaKnown RBP16.36■□□□□ 0.21
NUP54-217ENST00000514987 AIPL1Q9NZN9 384 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 ARMCX3Q9UH62 379 aaPredicted RBP16.36■□□□□ 0.21
NUP54-217ENST00000514987 FEM1BQ9UK73 627 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 SNX12Q9UMY4 172 aa16.36■□□□□ 0.21
NUP54-217ENST00000514987 EIF3DO15371 548 aaKnown RBP eCLIP16.35■□□□□ 0.21
NUP54-217ENST00000514987 SASH3O75995 380 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 NOL4O94818 638 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 PLEKP08567 350 aaPredicted RBP16.35■□□□□ 0.21
NUP54-217ENST00000514987 ANXA13P27216 316 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 HOXA13P31271 388 aaPredicted RBP16.35■□□□□ 0.21
NUP54-217ENST00000514987 PSMC6P62333 389 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 SETQ01105 290 aaPredicted RBP16.35■□□□□ 0.21
NUP54-217ENST00000514987 NFIL3Q16649 462 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 C10orf76Q5T2E6 689 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 STXBP4Q6ZWJ1 553 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 ZNF771Q7L3S4 317 aaPredicted RBP16.35■□□□□ 0.21
NUP54-217ENST00000514987 SFR1Q86XK3 245 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 FGFBP2Q9BYJ0 223 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 JADE2Q9NQC1 790 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 KCND2Q9NZV8 630 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 SEL1LQ9UBV2 794 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 L1RE1Q9UN81 338 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 BZW2Q9Y6E2 419 aaKnown RBP16.35■□□□□ 0.21
NUP54-217ENST00000514987 UBE4BO95155 1302 aa16.35■□□□□ 0.21
NUP54-217ENST00000514987 KIF13BQ9NQT8 1826 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 MEIS1O00470 390 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 AFPP02771 609 aaKnown RBP16.34■□□□□ 0.21
NUP54-217ENST00000514987 POLR2FP61218 127 aaKnown RBP16.34■□□□□ 0.21
NUP54-217ENST00000514987 CACNB1Q02641 598 aaPredicted RBP16.34■□□□□ 0.21
NUP54-217ENST00000514987 KCNH2Q12809 1159 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 TDRD12Q587J7 1177 aaKnown RBP16.34■□□□□ 0.21
NUP54-217ENST00000514987 LRCH2Q5VUJ6 765 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 HGSNATQ68CP4 663 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 OTOP1Q7RTM1 612 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 KRT26Q7Z3Y9 468 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 SPICE1Q8N0Z3 855 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 NOA1Q8NC60 698 aaKnown RBP16.34■□□□□ 0.21
NUP54-217ENST00000514987 NOX5Q96PH1 765 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 HSD17B14Q9BPX1 270 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 DEFB129Q9H1M3 183 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 BHMT2Q9H2M3 363 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 HDAC6Q9UBN7 1215 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 HYOU1Q9Y4L1 999 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 PSMD10O75832 226 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 CFBP00751 764 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 ECE1P42892 770 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 PRELPP51888 382 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 RAD51AP2Q09MP3 1159 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 ASIC2Q16515 512 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 LARGE2Q8N3Y3 721 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 AGBL3Q8NEM8 1001 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 NEK9Q8TD19 979 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 ACER1Q8TDN7 264 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 UIMC1Q96RL1 719 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 MMS19Q96T76 1030 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 ABCB6Q9NP58 842 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 RNF14Q9UBS8 474 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 FBXL5Q9UKA1 691 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 TFR2Q9UP52 801 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 DUSP10Q9Y6W6 482 aa16.34■□□□□ 0.21
NUP54-217ENST00000514987 CNTNAP1P78357 1384 aa16.33■□□□□ 0.21
NUP54-217ENST00000514987 CLRN2A0PK11 232 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 FAM13AO94988 1023 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 EPB41P11171 864 aaKnown RBP16.33■□□□□ 0.2
NUP54-217ENST00000514987 XRCC5P13010 732 aaKnown RBP16.33■□□□□ 0.2
NUP54-217ENST00000514987 VSNL1P62760 191 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 RINT1Q6NUQ1 792 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 NACC1Q96RE7 527 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 GANQ9H2C0 597 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 VIPAS39Q9H9C1 493 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 NLRC4Q9NPP4 1024 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 LOXHD1Q8IVV2 1947 aa16.33■□□□□ 0.2
NUP54-217ENST00000514987 GTPBP10A4D1E9 387 aaKnown RBP16.32■□□□□ 0.2
NUP54-217ENST00000514987 EML1O00423 815 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 PPP1R12BO60237 982 aaPredicted RBP16.32■□□□□ 0.2
NUP54-217ENST00000514987 GAS7O60861 476 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 NR3C1P04150 777 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 ASNSP08243 561 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 OAS2P29728 719 aaKnown RBP16.32■□□□□ 0.2
NUP54-217ENST00000514987 CAP2P40123 477 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 CASP5P51878 434 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 CYP4A11Q02928 519 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 EPHA7Q15375 998 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 SLC18A3Q16572 532 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 CEP55Q53EZ4 464 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 MMGT1Q8N4V1 131 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 SAMD3Q8N6K7 520 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 RIT2Q99578 217 aa16.32■□□□□ 0.2
NUP54-217ENST00000514987 GINM1Q9NU53 330 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms