RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TMX3Q96JJ7 454 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 SPZ1Q9BXG8 430 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 BRMS1Q9HCU9 246 aa8.84□□□□□ -0.99
LIMCH1-219ENST00000514096 PLIN4Q96Q06 1357 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 POLR3GO15318 223 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 ZEB2O60315 1214 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 B4GALT4O60513 344 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 HOXC6P09630 235 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 COPB2P35606 906 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 MTERF2Q49AM1 385 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 DUSP28Q4G0W2 176 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 LARP1BQ659C4 914 aaKnown RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 KRT40Q6A162 431 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 TPH2Q8IWU9 490 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 BLIDQ8IZY5 108 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 RNPC3Q96LT9 517 aaKnown RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 SDF4Q9BRK5 362 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 RNPEPQ9H4A4 650 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 BARHL2Q9NY43 387 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 PTPRZ1P23471 2315 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 COL11A1P12107 1806 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 ZBTB39O15060 712 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 DEXIO95424 95 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 MYOGP15173 224 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 MNAT1P51948 309 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 DGKDQ16760 1214 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 PFKFB3Q16875 520 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 CDR2LQ86X02 465 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 TFIP11Q9UBB9 837 aaKnown RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 TRIM43BA6NCK2 446 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 IPO5O00410 1097 aaKnown RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 TREHO43280 583 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 CDKL5O76039 1030 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 ECEL1O95672 775 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 GHRP10912 638 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 CPT1AP50416 773 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 PKN1Q16512 942 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 TKFCQ3LXA3 575 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 GET4Q7L5D6 327 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 VSIG10LQ86VR7 867 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 ABRAQ8N0Z2 381 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 TRIM43Q96BQ3 446 aaPredicted RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 RMI1Q9H9A7 625 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 RGL1Q9NZL6 768 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 DDX41Q9UJV9 622 aaKnown RBP8.83□□□□□ -1
LIMCH1-219ENST00000514096 USP20Q9Y2K6 914 aa8.83□□□□□ -1
LIMCH1-219ENST00000514096 DNM1LO00429 736 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 CTTNQ14247 550 aaKnown RBP8.82□□□□□ -1
LIMCH1-219ENST00000514096 ANKRD1Q15327 319 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 SHHQ15465 462 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 PAN2Q504Q3 1202 aaKnown RBP8.82□□□□□ -1
LIMCH1-219ENST00000514096 MAP3K21Q5TCX8 1036 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 IQSEC1Q6DN90 963 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 HSCBQ8IWL3 235 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 RETREG2Q8NC44 543 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 GIMAP7Q8NHV1 300 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 CCDC12Q8WUD4 166 aaPredicted RBP8.82□□□□□ -1
LIMCH1-219ENST00000514096 LZTS2Q9BRK4 669 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 GABBR1Q9UBS5 961 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 OGDHLQ9ULD0 1010 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 AKT3Q9Y243 479 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 ZNFX1Q9P2E3 1918 aaKnown RBP8.82□□□□□ -1
LIMCH1-219ENST00000514096 CTDNEP1O95476 244 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 CLTBP09497 229 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 CEP55Q53EZ4 464 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 PLA2G4FQ68DD2 849 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 ZNF365Q70YC5 407 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 CCDC148Q8NFR7 591 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 PIGOQ8TEQ8 1089 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 DNAJB3Q8WWF6 145 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 VTA1Q9NP79 307 aa8.82□□□□□ -1
LIMCH1-219ENST00000514096 SEPT9Q9UHD8 586 aaPredicted RBP8.82□□□□□ -1
LIMCH1-219ENST00000514096 DDX11L8A8MPP1 907 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 RFXAPO00287 272 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 MAFGO15525 162 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 IFNAR1P17181 557 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 MARCKSP29966 332 aaPredicted RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 TRMT44Q8IYL2 757 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 PDILTQ8N807 584 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 EHMT1Q9H9B1 1298 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 JPH1Q9HDC5 661 aaPredicted RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 POTEMA6NI47 508 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 ADAMTS4O75173 837 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 VTNP04004 478 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 TECP42680 631 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 CLCN3P51790 818 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 EPHB4P54760 987 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 NPEPPSP55786 919 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 NONOQ15233 471 aaKnown RBP eCLIP8.81□□□□□ -1
LIMCH1-219ENST00000514096 KIZQ2M2Z5 673 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 SPOUT1Q5T280 376 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 MYSM1Q5VVJ2 828 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 GDF6Q6KF10 455 aaPredicted RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 POTEDQ86YR6 584 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 NSUN7Q8NE18 718 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 ANKS1AQ92625 1134 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 APOL6Q9BWW8 343 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 DDX25Q9UHL0 483 aaKnown RBP8.81□□□□□ -1
LIMCH1-219ENST00000514096 WDR19Q8NEZ3 1342 aa8.81□□□□□ -1
LIMCH1-219ENST00000514096 ATP2A1O14983 1001 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms