RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 SMAD3P84022 425 aaKnown RBP4.78□□□□□ -1.64
LSM6-205ENST00000507449 EXOSC10Q01780 885 aaKnown RBP4.78□□□□□ -1.64
LSM6-205ENST00000507449 NR1I3Q14994 352 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 TERF2Q15554 542 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 SMAD2Q15796 467 aaKnown RBP4.78□□□□□ -1.64
LSM6-205ENST00000507449 ZNF124Q15973 351 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 CATSPEREQ5SY80 951 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 CC2D1AQ6P1N0 951 aaPredicted RBP4.78□□□□□ -1.64
LSM6-205ENST00000507449 ZSWIM9Q86XI8 627 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 RAVER1Q8IY67 606 aaKnown RBP4.78□□□□□ -1.64
LSM6-205ENST00000507449 NLGN4XQ8N0W4 816 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 CNTD1Q8N815 330 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 CLRN3Q8NCR9 226 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 TTLL11Q8NHH1 800 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 SLC5A5Q92911 643 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 SLC6A17Q9H1V8 727 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 NUDT5Q9UKK9 219 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 CARMIL2Q6F5E8 1435 aa4.78□□□□□ -1.64
LSM6-205ENST00000507449 MAFKO60675 156 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 PDE6BP35913 854 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 OCRLQ01968 901 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 BROXQ5VW32 411 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 BTBD8Q5XKL5 378 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 MIB1Q86YT6 1006 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 IRF2BP1Q8IU81 584 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 CBARPQ8N350 705 aaPredicted RBP4.77□□□□□ -1.65
LSM6-205ENST00000507449 PUS7LQ9H0K6 701 aaKnown RBP4.77□□□□□ -1.65
LSM6-205ENST00000507449 KCNH7Q9NS40 1196 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 RIC8BQ9NVN3 520 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 WASF3Q9UPY6 502 aa4.77□□□□□ -1.65
LSM6-205ENST00000507449 OR14I1A6ND48 311 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 K7ESF4 209 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 GABRDO14764 452 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 HIP1RO75146 1068 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 ZBTB7AO95365 584 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 LRG1P02750 347 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 SDHAP31040 664 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 VIPR1P32241 457 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 GJA4P35212 333 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 PHC1P78364 1004 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 SLC9A5Q14940 896 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 TMEM132BQ14DG7 1078 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 DDB1Q16531 1140 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 KCNMB1Q16558 191 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 CR1LQ2VPA4 569 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 PAN2Q504Q3 1202 aaKnown RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 TMC6Q7Z403 805 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 HDGFL2Q7Z4V5 671 aaPredicted RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 PROSER1Q86XN7 944 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 TRIM48Q8IWZ4 208 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 CMIPQ8IY22 773 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 ZSCAN18Q8TBC5 510 aaPredicted RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 LIN37Q96GY3 246 aaPredicted RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 C16orf92Q96LL3 132 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 TOX2Q96NM4 488 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 ZNF552Q9H707 407 aaPredicted RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 KCNK12Q9HB15 430 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 TOMM22Q9NS69 142 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.76□□□□□ -1.65
LSM6-205ENST00000507449 RBPJLQ9UBG7 517 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 DBR1Q9UK59 544 aaKnown RBP4.76□□□□□ -1.65
LSM6-205ENST00000507449 TRHDEQ9UKU6 1024 aa4.76□□□□□ -1.65
LSM6-205ENST00000507449 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 PRAMEF25A6NGN4 478 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ULK1O75385 1050 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 S100BP04271 92 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 ASGR2P07307 311 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 MMEP08473 750 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 TMEM253P0C7T8 217 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 FAHP16930 419 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 STAT5AP42229 794 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ZNF200P98182 395 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 ITKQ08881 620 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ZNF174Q15697 407 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 INAVAQ3KP66 663 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 GPR158Q5T848 1215 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 IQSEC1Q6DN90 963 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ZC3H14Q6PJT7 736 aaKnown RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 EP400NLQ6ZTU2 488 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 C11orf74Q86VG3 221 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 FAM126BQ8IXS8 530 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 FAM26EQ8N5C1 309 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ASB15Q8WXK1 588 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 FAM168AQ92567 244 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 FOXRED1Q96CU9 486 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 MTMR8Q96EF0 704 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 SEMA4AQ9H3S1 761 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 PCIF1Q9H4Z3 704 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 ACSS2Q9NR19 701 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 TOPORSQ9NS56 1045 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 DTLQ9NZJ0 730 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 HSPBP1Q9NZL4 362 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 BTBD7Q9P203 1132 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 G3BP2Q9UN86 482 aaKnown RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 NUB1Q9Y5A7 615 aa4.75□□□□□ -1.65
LSM6-205ENST00000507449 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.75□□□□□ -1.65
LSM6-205ENST00000507449 MYOCOSA0A1B0GUC4 107 aa4.74□□□□□ -1.65
LSM6-205ENST00000507449 FZD9O00144 591 aa4.74□□□□□ -1.65
LSM6-205ENST00000507449 HRKO00198 91 aa4.74□□□□□ -1.65
LSM6-205ENST00000507449 FOXP2O15409 715 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms