RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 BMS1Q14692 1282 aaKnown RBP8.43□□□□□ -1.06
VIM-207ENST00000495528 STYK1Q6J9G0 422 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 MASTLQ96GX5 879 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 PHACTR3Q96KR7 559 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 FCRL3Q96P31 734 aaPredicted RBP8.43□□□□□ -1.06
VIM-207ENST00000495528 DEPDC7Q96QD5 511 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 PFDN2Q9UHV9 154 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 MSRB2Q9Y3D2 182 aa8.43□□□□□ -1.06
VIM-207ENST00000495528 FAM221BA6H8Z2 402 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 AGRPO00253 132 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 ZGLP1P0C6A0 271 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 ERVFC1P60507 584 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 ST5P78524 1137 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 MTERF2Q49AM1 385 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 RTP2Q5QGT7 225 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 POMZP3Q6PJE2 187 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 SPATC1Q76KD6 591 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 ZNF227Q86WZ6 799 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 CRACR2BQ8N4Y2 399 aaPredicted RBP8.42□□□□□ -1.06
VIM-207ENST00000495528 BTN2A2Q8WVV5 523 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 C19orf73Q9NVV2 129 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 SNTG2Q9NY99 539 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 EBF1Q9UH73 591 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 ADGRE2Q9UHX3 823 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 PCNTO95613 3336 aa8.42□□□□□ -1.06
VIM-207ENST00000495528 CEMIPQ8WUJ3 1361 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 PRKAR2BP31323 418 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 CCDC144BQ3MJ40 725 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 OLFM4Q6UX06 510 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 NBPF5PQ86XG9 351 aaPredicted RBP8.41□□□□□ -1.06
VIM-207ENST00000495528 TRIM59Q8IWR1 403 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 NAT16Q8N8M0 369 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 MRGPRX3Q96LB0 322 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 CCDC113Q9H0I3 377 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 EPN3Q9H201 632 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 TAF1DQ9H5J8 278 aaPredicted RBP8.41□□□□□ -1.06
VIM-207ENST00000495528 ZSWIM4Q9H7M6 989 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 CTNND2Q9UQB3 1225 aa8.41□□□□□ -1.06
VIM-207ENST00000495528 DLEC1Q9Y238 1755 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 COL3A1P02461 1466 aaPredicted RBP8.4□□□□□ -1.06
VIM-207ENST00000495528 PASKQ96RG2 1323 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 A0A1W2PQU0 124 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 KLRG2A4D1S0 409 aaPredicted RBP8.4□□□□□ -1.06
VIM-207ENST00000495528 IQCA1LA6NCM1 817 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 FOXN1O15353 648 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 USP2O75604 605 aaPredicted RBP8.4□□□□□ -1.06
VIM-207ENST00000495528 NPR1P16066 1061 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 DUSP4Q13115 394 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 GRB10Q13322 594 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 RASA3Q14644 834 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 CCDC93Q567U6 631 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 GTF2IRD2BQ6EKJ0 949 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 CLEC4GQ6UXB4 293 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 MCM10Q7L590 875 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 GTF2IRD2Q86UP8 949 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 LDHDQ86WU2 507 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 ST13P5Q8NFI4 369 aaPredicted RBP8.4□□□□□ -1.06
VIM-207ENST00000495528 CCDC120Q96HB5 630 aa8.4□□□□□ -1.06
VIM-207ENST00000495528 ZNF277Q9NRM2 450 aaPredicted RBP8.4□□□□□ -1.06
VIM-207ENST00000495528 CCDC88AQ3V6T2 1871 aa8.4□□□□□ -1.07
VIM-207ENST00000495528 ANKRD31Q8N7Z5 1873 aa8.4□□□□□ -1.07
VIM-207ENST00000495528 UBR2Q8IWV8 1755 aa8.4□□□□□ -1.07
VIM-207ENST00000495528 CNTNAP1P78357 1384 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 ZNF541Q9H0D2 1346 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 SLX4Q8IY92 1834 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 AURKAO14965 403 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 SNRPA1P09661 255 aaKnown RBP8.39□□□□□ -1.07
VIM-207ENST00000495528 TRHRP34981 398 aaPredicted RBP8.39□□□□□ -1.07
VIM-207ENST00000495528 GDNFP39905 211 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 IRAK1P51617 712 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 SCRN1Q12765 414 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 IFRD2Q12894 506 aaPredicted RBP8.39□□□□□ -1.07
VIM-207ENST00000495528 RASGRF1Q13972 1273 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 DCTN1Q14203 1278 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 DPH6Q7L8W6 267 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 G6PC3Q9BUM1 346 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 ERVK13-1Q9NX77 482 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 NIP7Q9Y221 180 aaKnown RBP eCLIP8.39□□□□□ -1.07
VIM-207ENST00000495528 ZNF281Q9Y2X9 895 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 TIAM2Q8IVF5 1701 aa8.39□□□□□ -1.07
VIM-207ENST00000495528 FER1L6Q2WGJ9 1857 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 NPC1L1Q9UHC9 1359 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 C2orf71A6NGG8 1288 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 EPHX2P34913 555 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 GRIA2P42262 883 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 SEPHS1P49903 392 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 PPP2R2AP63151 447 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 HLFQ16534 295 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 CBLL1Q75N03 491 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 SYNE4Q8N205 404 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 MAP6Q96JE9 813 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 HHIPL1Q96JK4 782 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 FCRL2Q96LA5 508 aaPredicted RBP8.38□□□□□ -1.07
VIM-207ENST00000495528 DNAJC7Q99615 494 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 CWC22Q9HCG8 908 aaKnown RBP8.38□□□□□ -1.07
VIM-207ENST00000495528 GPRC5CQ9NQ84 441 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 HACL1Q9UJ83 578 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 ZNF652Q9Y2D9 606 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 BACE2Q9Y5Z0 518 aa8.38□□□□□ -1.07
VIM-207ENST00000495528 COL11A2P13942 1736 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms