RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 EPHA7Q15375 998 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 TRIM59Q8IWR1 403 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 SPICE1Q8N0Z3 855 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 ZNF397Q8NF99 534 aaPredicted RBP11.89□□□□□ -0.51
USP4-214ENST00000491791 CLEC4DQ8WXI8 215 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 TSC1Q92574 1164 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 WDR24Q96S15 920 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 EIF3CQ99613 913 aaKnown RBP11.89□□□□□ -0.51
USP4-214ENST00000491791 EIF2AK1Q9BQI3 630 aaKnown RBP11.89□□□□□ -0.51
USP4-214ENST00000491791 SLF1Q9BQI6 1058 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 NUCKS1Q9H1E3 243 aaKnown RBP11.89□□□□□ -0.51
USP4-214ENST00000491791 HAUS4Q9H6D7 363 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 SLC38A10Q9HBR0 1119 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 SEL1LQ9UBV2 794 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 COL4A3BPQ9Y5P4 624 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 MRFAP1Q9Y605 127 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 LOXHD1Q8IVV2 1947 aa11.89□□□□□ -0.51
USP4-214ENST00000491791 UBE4BO95155 1302 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 POTEFA5A3E0 1075 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 EIF3DO15371 548 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP4-214ENST00000491791 SLITRK3O94933 977 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 HOXA13P31271 388 aaPredicted RBP11.88□□□□□ -0.51
USP4-214ENST00000491791 INPP5BP32019 993 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 ZNF76P36508 570 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 STAT3P40763 770 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 ZNF157P51786 506 aaPredicted RBP11.88□□□□□ -0.51
USP4-214ENST00000491791 ZNF131P52739 623 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 RBM10P98175 930 aaKnown RBP11.88□□□□□ -0.51
USP4-214ENST00000491791 HERC4Q5GLZ8 1057 aaPredicted RBP11.88□□□□□ -0.51
USP4-214ENST00000491791 POTEGQ6S5H5 508 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 POTEEQ6S8J3 1075 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 MIGA2Q7L4E1 593 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 FRMD5Q7Z6J6 570 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 CYP2W1Q8TAV3 490 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 GJA10Q969M2 543 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 C12orf42Q96LP6 360 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 FEZ1Q99689 392 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 MXRA8Q9BRK3 442 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 DESI2Q9BSY9 194 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 SAGE1Q9NXZ1 904 aa11.88□□□□□ -0.51
USP4-214ENST00000491791 REXO2Q9Y3B8 237 aaKnown RBP11.88□□□□□ -0.51
USP4-214ENST00000491791 EML1O00423 815 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 TADA3O75528 432 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 LYPLA2O95372 231 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 CFBP00751 764 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 CYLC1P35663 651 aaPredicted RBP11.87□□□□□ -0.51
USP4-214ENST00000491791 OAZ1P54368 228 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 MCCD1P59942 119 aaPredicted RBP11.87□□□□□ -0.51
USP4-214ENST00000491791 PSMC6P62333 389 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 KNOP1Q1ED39 458 aaKnown RBP11.87□□□□□ -0.51
USP4-214ENST00000491791 DCAF15Q66K64 600 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 NCAPH2Q6IBW4 605 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 XRRA1Q6P2D8 792 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 C1orf186Q6ZWK4 172 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 REM2Q8IYK8 340 aaPredicted RBP11.87□□□□□ -0.51
USP4-214ENST00000491791 EHBP1Q8NDI1 1231 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 TBC1D5Q92609 795 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 NACC1Q96RE7 527 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 CHP1Q99653 195 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 ZNHIT6Q9NWK9 470 aaKnown RBP11.87□□□□□ -0.51
USP4-214ENST00000491791 ODF2LQ9ULJ1 636 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 ADAMTS5Q9UNA0 930 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 PPP2R3BQ9Y5P8 575 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 UBIAD1Q9Y5Z9 338 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 CASP8AP2Q9UKL3 1982 aa11.87□□□□□ -0.51
USP4-214ENST00000491791 ADM5C9JUS6 153 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 SLC16A3O15427 465 aaKnown RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 MAPTP10636 758 aaKnown RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 H2AFXP16104 143 aaPredicted RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 TRIM21P19474 475 aaKnown RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 GUCY2CP25092 1073 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 HOXD13P35453 343 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 MAPK8IP2Q13387 824 aaPredicted RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 MYBPC2Q14324 1141 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 LRRC41Q15345 812 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 PCNX4Q63HM2 1172 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 RINT1Q6NUQ1 792 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 CCDC174Q6PII3 467 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 RSRC2Q7L4I2 434 aaKnown RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 GLIS3Q8NEA6 775 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 BAP1Q92560 729 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 PURBQ96QR8 312 aaKnown RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 REEP2Q9BRK0 252 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 CCDC94Q9BW85 323 aaPredicted RBP11.86□□□□□ -0.51
USP4-214ENST00000491791 ZNF341Q9BYN7 854 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 AGPAT5Q9NUQ2 364 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 FBXO28Q9NVF7 368 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 GGA3Q9NZ52 723 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 CDC23Q9UJX2 597 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 PPP1R9AQ9ULJ8 1098 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 DOCK1Q14185 1865 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 SMCHD1A6NHR9 2005 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 PARP14Q460N5 1801 aa11.86□□□□□ -0.51
USP4-214ENST00000491791 SSU72P8A0A1W2PR75 194 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 RBAK-RBAKDNI3L0D1 243 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 ATP2A1O14983 1001 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 CETN3O15182 167 aa11.85□□□□□ -0.51
USP4-214ENST00000491791 NKRFO15226 690 aaKnown RBP eCLIP11.85□□□□□ -0.51
USP4-214ENST00000491791 DHX15O43143 795 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms