RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 PCYT2Q99447 389 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 SMARCAD1Q9H4L7 1026 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 TMEM260Q9NX78 707 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 LMCD1Q9NZU5 365 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 SLC9A2Q9UBY0 812 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 COG5Q9UP83 839 aa17.97■□□□□ 0.47
SMPD4-220ENST00000491319 MBLAC1A4D2B0 266 aaPredicted RBP17.96■□□□□ 0.47
SMPD4-220ENST00000491319 MAFGO15525 162 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 IGBP1P78318 339 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 MGAT3Q09327 533 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 MARCH8Q5T0T0 291 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 RPAINQ86UA6 219 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 DNAJB3Q8WWF6 145 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 HLA-CQ95604 372 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 ZBTB10Q96DT7 871 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 YME1L1Q96TA2 773 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 BARHL2Q9NY43 387 aa17.96■□□□□ 0.47
SMPD4-220ENST00000491319 NAP1L2Q9ULW6 460 aaPredicted RBP17.96■□□□□ 0.47
SMPD4-220ENST00000491319 BDP1A6H8Y1 2624 aa17.95■□□□□ 0.46
SMPD4-220ENST00000491319 SMCO2A6NFE2 343 aa17.95■□□□□ 0.46
SMPD4-220ENST00000491319 hCG_1984214I3L0E3 225 aa17.95■□□□□ 0.46
SMPD4-220ENST00000491319 ARP10275 920 aa17.95■□□□□ 0.46
SMPD4-220ENST00000491319 ZNF713Q8N859 430 aaPredicted RBP17.95■□□□□ 0.46
SMPD4-220ENST00000491319 NFASCO94856 1347 aa17.95■□□□□ 0.46
SMPD4-220ENST00000491319 FOSP01100 380 aaPredicted RBP17.94■□□□□ 0.46
SMPD4-220ENST00000491319 INSRRP14616 1297 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 SREBF1P36956 1147 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 CLK2P49760 499 aaKnown RBP17.94■□□□□ 0.46
SMPD4-220ENST00000491319 RCAN1P53805 252 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 ACTR2P61160 394 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 FGD1P98174 961 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 APOBRQ0VD83 1088 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 ITGB3BPQ13352 177 aaPredicted RBP17.94■□□□□ 0.46
SMPD4-220ENST00000491319 AP3B2Q13367 1082 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 LPIN1Q14693 890 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 CEP55Q53EZ4 464 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 RSPH3Q86UC2 560 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 SDF4Q9BRK5 362 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 AGO4Q9HCK5 861 aaKnown RBP17.94■□□□□ 0.46
SMPD4-220ENST00000491319 CDY2AQ9Y6F7 541 aa17.94■□□□□ 0.46
SMPD4-220ENST00000491319 HMGB1P09429 215 aaKnown RBP17.93■□□□□ 0.46
SMPD4-220ENST00000491319 ADD1P35611 737 aaKnown RBP17.93■□□□□ 0.46
SMPD4-220ENST00000491319 METAP2P50579 478 aaKnown RBP eCLIP17.93■□□□□ 0.46
SMPD4-220ENST00000491319 EPC2Q52LR7 807 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 FBXO47Q5MNV8 452 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 Q6ZUG5 572 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 TEX2Q8IWB9 1127 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 TRAPPC12Q8WVT3 735 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 JAKMIP1Q96N16 626 aaKnown RBP17.93■□□□□ 0.46
SMPD4-220ENST00000491319 FAM49AQ9H0Q0 323 aaPredicted RBP17.93■□□□□ 0.46
SMPD4-220ENST00000491319 AZI2Q9H6S1 392 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 TRPC6Q9Y210 931 aa17.93■□□□□ 0.46
SMPD4-220ENST00000491319 DDX39AO00148 427 aaKnown RBP17.92■□□□□ 0.46
SMPD4-220ENST00000491319 ADAMTS3O15072 1205 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 MRPS6P82932 125 aaKnown RBP17.92■□□□□ 0.46
SMPD4-220ENST00000491319 PLCB4Q15147 1175 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 PFKFB3Q16875 520 aaPredicted RBP17.92■□□□□ 0.46
SMPD4-220ENST00000491319 JAKMIP3Q5VZ66 844 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 KCNB2Q92953 911 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 BRF1Q92994 677 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 SAMD11Q96NU1 681 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 SNX14Q9Y5W7 946 aa17.92■□□□□ 0.46
SMPD4-220ENST00000491319 NID2Q14112 1375 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 FNDC1Q4ZHG4 1894 aaPredicted RBP17.91■□□□□ 0.46
SMPD4-220ENST00000491319 RRN3P2A6NIE6 340 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 MEIS1O00470 390 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 CCNE2O96020 404 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 SCG2P13521 617 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 HSPA4P34932 840 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 TMEM62Q0P6H9 643 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 TSHZ1Q6ZSZ6 1077 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 TMEM192Q8IY95 271 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 MRPL38Q96DV4 380 aaKnown RBP17.91■□□□□ 0.46
SMPD4-220ENST00000491319 GLT8D2Q9H1C3 349 aa17.91■□□□□ 0.46
SMPD4-220ENST00000491319 UBE2ZQ9H832 354 aaPredicted RBP17.91■□□□□ 0.46
SMPD4-220ENST00000491319 AGO3Q9H9G7 860 aaKnown RBP17.91■□□□□ 0.46
SMPD4-220ENST00000491319 FAM86B1E9PN63 330 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 FAM86B2P0C5J1 330 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 ZNF76P36508 570 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 STAT5BP51692 787 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 GPM6BQ13491 265 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 BLOC1S2Q6QNY1 142 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 PLPPR4Q7Z2D5 763 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 LINC01599Q8WXQ3 324 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 UIMC1Q96RL1 719 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 RC3H2Q9HBD1 1191 aaKnown RBP17.9■□□□□ 0.46
SMPD4-220ENST00000491319 ADGRA3Q8IWK6 1321 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 PLXNA4Q9HCM2 1894 aa17.9■□□□□ 0.46
SMPD4-220ENST00000491319 IGLV3-22A0A075B6J6 115 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 CCDC196A0A1B0GTZ2 297 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 ESYT2A0FGR8 921 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 POTEB3A0JP26 581 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 H3BNC9 293 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 ATG7O95352 703 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 CD52P31358 61 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 PKN1Q16512 942 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 POTEBQ6S5H4 581 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 NIPA1Q7RTP0 329 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 PLA2G4DQ86XP0 818 aa17.89■□□□□ 0.45
SMPD4-220ENST00000491319 CRYGNQ8WXF5 182 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms