RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 IGKV6D-21A0A0A0MT36 114 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 FAM205CA6NFA0 338 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 ZBBXA8MT70 800 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 CTSHP09668 335 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 RBM25P49756 843 aaKnown RBP20.58■□□□□ 0.89
COL9A3-214ENST00000490398 RABGGTBP53611 331 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 IGBP1P78318 339 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 GRIK4Q16099 956 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 TRAPPC12Q8WVT3 735 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 PBX4Q9BYU1 374 aa20.58■□□□□ 0.89
COL9A3-214ENST00000490398 CHD7Q9P2D1 2997 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 CXCL10P02778 98 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 INSRRP14616 1297 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 ATP4AP20648 1035 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 STAT5BP51692 787 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 USP11P51784 963 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 SETQ01105 290 aaPredicted RBP20.57■□□□□ 0.88
COL9A3-214ENST00000490398 INF2Q27J81 1249 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 CCDC83Q8IWF9 413 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 SEMA6BQ9H3T3 888 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 LIMCH1Q9UPQ0 1083 aa20.57■□□□□ 0.88
COL9A3-214ENST00000490398 NRCAMQ92823 1304 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 PFKMP08237 780 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 DNAJB2P25686 324 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 NR5A1Q13285 461 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 GALNT17Q6IS24 598 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 SWSAP1Q6NVH7 229 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 PLPPR4Q7Z2D5 763 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 AZI2Q9H6S1 392 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 YBX2Q9Y2T7 364 aaKnown RBP20.56■□□□□ 0.88
COL9A3-214ENST00000490398 SLC4A7Q9Y6M7 1214 aa20.56■□□□□ 0.88
COL9A3-214ENST00000490398 CYP3A7-CYP3A51PA0A087WV96 503 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 RSPH10B2B2RC85 870 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 RSPH10BP0C881 870 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 GNAT1P11488 350 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 MYOGP15173 224 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 CYP3A7P24462 503 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 NONOQ15233 471 aaKnown RBP eCLIP20.55■□□□□ 0.88
COL9A3-214ENST00000490398 Q4G0T1 1027 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 ZNF697Q5TEC3 545 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 TMCO2Q7Z6W1 182 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-214ENST00000490398 FAM177A1Q8N128 213 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-214ENST00000490398 SLC5A5Q92911 643 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 MBOAT7Q96N66 472 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 TBC1D22BQ9NU19 505 aa20.55■□□□□ 0.88
COL9A3-214ENST00000490398 BACH1O14867 736 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 SLC37A4O43826 429 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 ZNF746Q6NUN9 644 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-214ENST00000490398 KRT25Q7Z3Z0 450 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 TNFRSF25Q93038 417 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 TIFAQ96CG3 184 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 UNC45AQ9H3U1 944 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 TUBE1Q9UJT0 475 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 TRPC6Q9Y210 931 aa20.54■□□□□ 0.88
COL9A3-214ENST00000490398 SPTBN5Q9NRC6 3674 aaKnown RBP20.54■□□□□ 0.88
COL9A3-214ENST00000490398 MBLAC1A4D2B0 266 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-214ENST00000490398 CHRNA1P02708 482 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 DEFB103AP81534 67 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 LETM2Q2VYF4 491 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 PIK3AP1Q6ZUJ8 805 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 DNAJB3Q8WWF6 145 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 MTIF3Q9H2K0 278 aaKnown RBP20.53■□□□□ 0.88
COL9A3-214ENST00000490398 NKX2-4Q9H2Z4 354 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 ZNF302Q9NR11 478 aa20.53■□□□□ 0.88
COL9A3-214ENST00000490398 POTEB3A0JP26 581 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 CHMP2AO43633 222 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 PSMD10O75832 226 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 CD2BP2O95400 341 aaKnown RBP20.52■□□□□ 0.88
COL9A3-214ENST00000490398 ACTN1P12814 892 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 ATP2A2P16615 1042 aaKnown RBP20.52■□□□□ 0.88
COL9A3-214ENST00000490398 GUCY1B3Q02153 619 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 MGAT3Q09327 533 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 GRIN2CQ14957 1233 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 UGCGQ16739 394 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 MIS18BP1Q6P0N0 1132 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 PDXDC2PQ6P474 469 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 CNKSR3Q6P9H4 555 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 POTEBQ6S5H4 581 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 DBF4BQ8NFT6 615 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 ETNPPLQ8TBG4 499 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 WASF1Q92558 559 aa20.52■□□□□ 0.88
COL9A3-214ENST00000490398 CDX2Q99626 313 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-214ENST00000490398 FAM49AQ9H0Q0 323 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-214ENST00000490398 CCDC194A0A1B0GVG4 234 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 ZBTB42B2RXF5 422 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 BTBD18B2RXH4 712 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 WNT7AO00755 349 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 ARHGEF15O94989 841 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 XBP1P17861 261 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 WDR5P61964 334 aaKnown RBP20.51■□□□□ 0.87
COL9A3-214ENST00000490398 KRT76Q01546 638 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 FAM26DQ5JW98 314 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 LRCH2Q5VUJ6 765 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 KRT40Q6A162 431 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 B3GNT9Q6UX72 402 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 TRMT1LQ7Z2T5 733 aaKnown RBP20.51■□□□□ 0.87
COL9A3-214ENST00000490398 ATP8B4Q8TF62 1192 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 RIT2Q99578 217 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 GABBR1Q9UBS5 961 aa20.51■□□□□ 0.87
COL9A3-214ENST00000490398 DDX25Q9UHL0 483 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms