RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 KATNA1O75449 491 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 MTA2O94776 668 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 RASGRP1O95267 797 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 POU3F2P20265 443 aaPredicted RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 BCL6P41182 706 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 HALP42357 657 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 CDC37Q16543 378 aaPredicted RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 TBC1D10BQ4KMP7 808 aaPredicted RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 CCDC92Q53HC0 331 aaPredicted RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 FGD2Q7Z6J4 655 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 LRRTM3Q86VH5 581 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 DGKHQ86XP1 1220 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 THNSL2Q86YJ6 484 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 AHI1Q8N157 1196 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 CLASRPQ8N2M8 674 aaKnown RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 PPM1KQ8N3J5 372 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 LZTR1Q8N653 840 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 ANKRD42Q8N9B4 389 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 ABHD4Q8TB40 342 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 PANK1Q8TE04 598 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 JPH3Q8WXH2 748 aaPredicted RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 MYLIPQ8WY64 445 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 DDX1Q92499 740 aaKnown RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 NELL1Q92832 810 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 TRMT2BQ96GJ1 504 aaKnown RBP4.98□□□□□ -1.61
VPS41-212ENST00000482217 TMEM169Q96HH4 297 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 CHAMP1Q96JM3 812 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 FAM84AQ96KN4 292 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 NELL2Q99435 816 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 SLC38A3Q99624 504 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 ANP32EQ9BTT0 268 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 CDIP1Q9H305 208 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 CRTAC1Q9NQ79 661 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 IMPACTQ9P2X3 320 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 IPPQ9Y573 584 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 PCDHA9Q9Y5H5 950 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 X6R8D5 127 aa4.98□□□□□ -1.61
VPS41-212ENST00000482217 FAM47E-STBD1D6RA91 191 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 GSTA4O15217 222 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 PSPNO60542 156 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 SOD2P04179 222 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 C8AP07357 584 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MYCLP1P12525 358 aaPredicted RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 PRKCAP17252 672 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 GRK2P25098 689 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 GRK3P35626 688 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 CASP2P42575 452 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 SARSP49591 514 aaKnown RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 MLC1Q15049 377 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 PKN1Q16512 942 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 RGL3Q3MIN7 710 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MROH9Q5TGP6 573 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 FYB2Q5VWT5 728 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 LVRNQ6Q4G3 990 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MPZL3Q6UWV2 235 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 UBE2R2Q712K3 238 aaPredicted RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 CEP68Q76N32 757 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 NLRX1Q86UT6 975 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MORC1Q86VD1 984 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 RIOX2Q8IUF8 465 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 VPS37AQ8NEZ2 397 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 NUP43Q8NFH3 380 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 PLEKHO2Q8TD55 490 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 SNRNP27Q8WVK2 155 aaKnown RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 TIFAQ96CG3 184 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 GPR101Q96P66 508 aaPredicted RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 SERINC2Q96SA4 455 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 SELENOOQ9BVL4 669 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 KMT5AQ9NQR1 393 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 CLDND1Q9NY35 253 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MARCH2Q9P0N8 246 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 GULP1Q9UBP9 304 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 MAPRE3Q9UPY8 281 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 RABGAP1Q9Y3P9 1069 aa4.97□□□□□ -1.61
VPS41-212ENST00000482217 TNPO3Q9Y5L0 923 aaKnown RBP4.97□□□□□ -1.61
VPS41-212ENST00000482217 KLRG2A4D1S0 409 aaPredicted RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 A6NCN8 305 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 GSG1L2A8MUP6 293 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 PDE8AO60658 829 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 PPP1R11O60927 126 aaPredicted RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 NBNO60934 754 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 RHOBTB3O94955 611 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 IFIT2P09913 472 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 PNLIPP16233 465 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 SOX5P35711 763 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 ARL4AP40617 200 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 STAT3P40763 770 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 CLK1P49759 484 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 ERVFC1P60507 584 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 CYP4F8P98187 520 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 MVKQ03426 396 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 HLTFQ14527 1009 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS41-212ENST00000482217 FAM47CQ5HY64 1035 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 ZCCHC8Q6NZY4 707 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 CNNM4Q6P4Q7 775 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 DDX53Q86TM3 631 aaKnown RBP4.96□□□□□ -1.62
VPS41-212ENST00000482217 CABP7Q86V35 215 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 NLRP10Q86W26 655 aa4.96□□□□□ -1.62
VPS41-212ENST00000482217 ANKLE2Q86XL3 938 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms