RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 KSR1Q8IVT5 923 aa16■□□□□ 0.15
CHD3-211ENST00000481999 GUF1Q8N442 669 aaKnown RBP16■□□□□ 0.15
CHD3-211ENST00000481999 SYTL5Q8TDW5 730 aaPredicted RBP16■□□□□ 0.15
CHD3-211ENST00000481999 RABGGTAQ92696 567 aa16■□□□□ 0.15
CHD3-211ENST00000481999 HSD17B14Q9BPX1 270 aa16■□□□□ 0.15
CHD3-211ENST00000481999 NOC4LQ9BVI4 516 aaKnown RBP16■□□□□ 0.15
CHD3-211ENST00000481999 BMP2KQ9NSY1 1161 aaPredicted RBP16■□□□□ 0.15
CHD3-211ENST00000481999 ABHD10Q9NUJ1 306 aa16■□□□□ 0.15
CHD3-211ENST00000481999 SBF1O95248 1867 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 RBBP6Q7Z6E9 1792 aaKnown RBP15.99■□□□□ 0.15
CHD3-211ENST00000481999 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 SORBS3O60504 671 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 MYCLP12524 364 aaPredicted RBP15.99■□□□□ 0.15
CHD3-211ENST00000481999 KRT9P35527 623 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 FAM193AP78312 1265 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 SEMA3FQ13275 785 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 DCAF15Q66K64 600 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 MYOCDQ8IZQ8 938 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 ACRBPQ8NEB7 543 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 SLC5A5Q92911 643 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 TRERF1Q96PN7 1200 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 TFR2Q9UP52 801 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 MYBP10242 640 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 APBA1Q02410 837 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 TBC1D8BQ0IIM8 1120 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 ITGB3BPQ13352 177 aaPredicted RBP15.99■□□□□ 0.15
CHD3-211ENST00000481999 ZNF771Q7L3S4 317 aaPredicted RBP15.99■□□□□ 0.15
CHD3-211ENST00000481999 MAEAQ7L5Y9 396 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 SYT2Q8N9I0 419 aaPredicted RBP15.99■□□□□ 0.15
CHD3-211ENST00000481999 ERMNQ8TAM6 284 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 GOLGA1Q92805 767 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 ZNF112Q9UJU3 913 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 RABGAP1Q9Y3P9 1069 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 TELO2Q9Y4R8 837 aa15.99■□□□□ 0.15
CHD3-211ENST00000481999 HOXD13P35453 343 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 TUBB2AQ13885 445 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 TEX35Q5T0J7 233 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 APOBEC3FQ8IUX4 373 aaKnown RBP15.98■□□□□ 0.15
CHD3-211ENST00000481999 MXRA8Q9BRK3 442 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 TUBB2BQ9BVA1 445 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 DNAH12Q6ZR08 3092 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 ATP9AO75110 1047 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 PRPF6O94906 941 aaKnown RBP15.98■□□□□ 0.15
CHD3-211ENST00000481999 ZCWPW2Q504Y3 356 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 MCTP2Q6DN12 878 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 CYP26C1Q6V0L0 522 aa15.98■□□□□ 0.15
CHD3-211ENST00000481999 RLFQ13129 1914 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 TRAF5O00463 557 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 PLS1Q14651 629 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 SNRNP48Q6IEG0 339 aaKnown RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 CCDC65Q8IXS2 484 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 PARP14Q460N5 1801 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 USP2O75604 605 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 PPP2R5CQ13362 524 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 BAATQ14032 418 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 VGLL4Q14135 290 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 TMEM132BQ14DG7 1078 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 RINT1Q6NUQ1 792 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 SMCR8Q8TEV9 937 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 PCMTD1Q96MG8 357 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 LXNQ9BS40 222 aa15.97■□□□□ 0.15
CHD3-211ENST00000481999 FAM207AQ9NSI2 230 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 CTDP1Q9Y5B0 961 aaPredicted RBP15.97■□□□□ 0.15
CHD3-211ENST00000481999 PHIPQ8WWQ0 1821 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 TRIM21P19474 475 aaKnown RBP15.96■□□□□ 0.15
CHD3-211ENST00000481999 ZC2HC1CQ53FD0 456 aaPredicted RBP15.96■□□□□ 0.15
CHD3-211ENST00000481999 COBLL1Q53SF7 1204 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 TREML2Q5T2D2 321 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 RNF207Q6ZRF8 634 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 RMDN3Q96TC7 470 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 KCTD10Q9H3F6 313 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 RNF146Q9NTX7 359 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 ZNF214Q9UL59 606 aaPredicted RBP15.96■□□□□ 0.15
CHD3-211ENST00000481999 CEP350Q5VT06 3117 aa15.96■□□□□ 0.15
CHD3-211ENST00000481999 RPTORQ8N122 1335 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 FRMD3A2A2Y4 597 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 TESPA1A2RU30 521 aaPredicted RBP15.96■□□□□ 0.14
CHD3-211ENST00000481999 DHX15O43143 795 aaKnown RBP15.96■□□□□ 0.14
CHD3-211ENST00000481999 PGM5Q15124 567 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 TKFCQ3LXA3 575 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 ZNF569Q5MCW4 686 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 SRGAP1Q7Z6B7 1085 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 CEP112Q8N8E3 955 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 R3HDMLQ9H3Y0 253 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 CDC23Q9UJX2 597 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 SAMM50Q9Y512 469 aa15.96■□□□□ 0.14
CHD3-211ENST00000481999 CTAGE9A4FU28 777 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 NMT1P30419 496 aaKnown RBP15.95■□□□□ 0.14
CHD3-211ENST00000481999 PLA2G4AP47712 749 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 USP14P54578 494 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 TUBB4BP68371 445 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 TRAF1Q13077 416 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 CC2D1AQ6P1N0 951 aaPredicted RBP15.95■□□□□ 0.14
CHD3-211ENST00000481999 WDR59Q6PJI9 974 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.95■□□□□ 0.149e-7■□□□□ 10.3
CHD3-211ENST00000481999 POLR3CQ9BUI4 534 aaPredicted RBP15.95■□□□□ 0.14
CHD3-211ENST00000481999 NDST4Q9H3R1 872 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 MYO1AQ9UBC5 1043 aa15.95■□□□□ 0.14
CHD3-211ENST00000481999 DNM2P50570 870 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms