RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 RBAK-RBAKDNI3L0D1 243 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 FGBP02675 491 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 GNAT1P11488 350 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 ADAM17P78536 824 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 KRT76Q01546 638 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 GUCY1B3Q02153 619 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 PLCB4Q15147 1175 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 ZNF746Q6NUN9 644 aaPredicted RBP17.65■□□□□ 0.42
HMGA1-206ENST00000478214 MIS18BP1Q6P0N0 1132 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 LRRC8DQ7L1W4 858 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 OTOP2Q7RTS6 562 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 PLPPR4Q7Z2D5 763 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 NEK8Q86SG6 692 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 CCDC60Q8IWA6 550 aaPredicted RBP17.65■□□□□ 0.42
HMGA1-206ENST00000478214 DIS3L2Q8IYB7 885 aaKnown RBP17.65■□□□□ 0.42
HMGA1-206ENST00000478214 DDX25Q9UHL0 483 aaKnown RBP17.65■□□□□ 0.42
HMGA1-206ENST00000478214 NRCAMQ92823 1304 aa17.65■□□□□ 0.42
HMGA1-206ENST00000478214 SLC37A4O43826 429 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 INSRRP14616 1297 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 RFC2P35250 354 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 THPOP40225 353 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 HMGN5P82970 282 aaKnown RBP17.64■□□□□ 0.41
HMGA1-206ENST00000478214 GPNMBQ14956 572 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 GRIK4Q16099 956 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 ZNF618Q5T7W0 954 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 RASIP1Q5U651 963 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 LRCH2Q5VUJ6 765 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 SWSAP1Q6NVH7 229 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 TRAF7Q6Q0C0 670 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 RIT2Q99578 217 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 TCEAL9Q9UHQ7 104 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 TRPC6Q9Y210 931 aa17.64■□□□□ 0.41
HMGA1-206ENST00000478214 GAS7O60861 476 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 IGBP1P78318 339 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 FAM160B1Q5W0V3 765 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 PDXDC2PQ6P474 469 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 SMAP1Q8IYB5 467 aaPredicted RBP17.63■□□□□ 0.41
HMGA1-206ENST00000478214 IL27Q8NEV9 243 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 ETNPPLQ8TBG4 499 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 HERVK_113Q902F9 699 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 TMX3Q96JJ7 454 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 C8orf76Q96K31 380 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 TEKT3Q9BXF9 490 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 ZNF302Q9NR11 478 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 CXXC1Q9P0U4 656 aaPredicted RBP17.63■□□□□ 0.41
HMGA1-206ENST00000478214 PCDHA10Q9Y5I2 948 aa17.63■□□□□ 0.41
HMGA1-206ENST00000478214 CHMP2AO43633 222 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 CCNT1O60563 726 aaKnown RBP17.62■□□□□ 0.41
HMGA1-206ENST00000478214 PSMD10O75832 226 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 PSAPP07602 524 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 PFKMP08237 780 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 GCFC2P16383 781 aaKnown RBP17.62■□□□□ 0.41
HMGA1-206ENST00000478214 SLC26A2P50443 739 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 MARCH8Q5T0T0 291 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 FAM109BQ6ICB4 259 aaPredicted RBP17.62■□□□□ 0.41
HMGA1-206ENST00000478214 PPP4R3AQ6IN85 833 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 RUFY4Q6ZNE9 571 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 FAM184AQ8NB25 1140 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 TRAPPC12Q8WVT3 735 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 ZBTB10Q96DT7 871 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 FTOQ9C0B1 505 aaKnown RBP eCLIP17.62■□□□□ 0.41
HMGA1-206ENST00000478214 UNC45AQ9H3U1 944 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 DISC1Q9NRI5 854 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 SAMM50Q9Y512 469 aa17.62■□□□□ 0.41
HMGA1-206ENST00000478214 TRIP12Q14669 1992 aaPredicted RBP17.62■□□□□ 0.41
HMGA1-206ENST00000478214 POTEB3A0JP26 581 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 MBLAC1A4D2B0 266 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-206ENST00000478214 RRN3P2A6NIE6 340 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 WDR64B1ANS9 1081 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 NBNO60934 754 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 CTSHP09668 335 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 ATP4AP20648 1035 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 MBTPS1Q14703 1052 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 SAFBQ15424 915 aaKnown RBP eCLIP17.61■□□□□ 0.41
HMGA1-206ENST00000478214 POTEBQ6S5H4 581 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 FBXO18Q8NFZ0 1043 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 ATP8B4Q8TF62 1192 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 KCNMB3Q9NPA1 279 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 GABBR1Q9UBS5 961 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 TUBE1Q9UJT0 475 aa17.61■□□□□ 0.41
HMGA1-206ENST00000478214 MAFBQ9Y5Q3 323 aaPredicted RBP17.61■□□□□ 0.41
HMGA1-206ENST00000478214 ZBBXA8MT70 800 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 RSPH10B2B2RC85 870 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 PARNO95453 639 aaKnown RBP17.6■□□□□ 0.41
HMGA1-206ENST00000478214 CXCL10P02778 98 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 RSPH10BP0C881 870 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 MCM2P49736 904 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 SMAD3P84022 425 aaKnown RBP17.6■□□□□ 0.41
HMGA1-206ENST00000478214 B3GNT9Q6UX72 402 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 POTEDQ86YR6 584 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 CKAP2LQ8IYA6 745 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 TNPO1Q92973 898 aaKnown RBP17.6■□□□□ 0.41
HMGA1-206ENST00000478214 NAP1L4Q99733 375 aaKnown RBP17.6■□□□□ 0.41
HMGA1-206ENST00000478214 MTIF3Q9H2K0 278 aaKnown RBP17.6■□□□□ 0.41
HMGA1-206ENST00000478214 SCN5AQ14524 2016 aa17.6■□□□□ 0.41
HMGA1-206ENST00000478214 IGSF9BQ9UPX0 1349 aa17.59■□□□□ 0.41
HMGA1-206ENST00000478214 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.59■□□□□ 0.41
HMGA1-206ENST00000478214 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.59■□□□□ 0.41
HMGA1-206ENST00000478214 GRXCR1A8MXD5 290 aa17.59■□□□□ 0.41
HMGA1-206ENST00000478214 WNT7AO00755 349 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms