RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 AK2P54819 239 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 WDR5P61964 334 aaKnown RBP13.59□□□□□ -0.23
SYNE1-221ENST00000472563 TCTN1Q2MV58 587 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 PRR16Q569H4 304 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 FAM26DQ5JW98 314 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 MARCH8Q5T0T0 291 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 ABHD15Q6UXT9 468 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 DAGLBQ8NCG7 672 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 ZNF577Q9BSK1 485 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 CHD9Q3L8U1 2897 aa13.59□□□□□ -0.23
SYNE1-221ENST00000472563 KIF28PB7ZC32 967 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 EDIL3O43854 480 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 SEC24BO95487 1268 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 RPLP2P05387 115 aaKnown RBP13.58□□□□□ -0.24
SYNE1-221ENST00000472563 INSRRP14616 1297 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 MYOGP15173 224 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 FOSL2P15408 326 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 PLCB4Q15147 1175 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 NPY5RQ15761 445 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 PLEKHG4Q58EX7 1191 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 RSPH3Q86UC2 560 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 BLIDQ8IZY5 108 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 SLC17A8Q8NDX2 589 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 DBF4BQ8NFT6 615 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 LENG9Q96B70 501 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 AIFM3Q96NN9 605 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 TUBE1Q9UJT0 475 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 STK36Q9NRP7 1315 aa13.58□□□□□ -0.24
SYNE1-221ENST00000472563 M0R2N6 131 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 DDX39AO00148 427 aaKnown RBP13.57□□□□□ -0.24
SYNE1-221ENST00000472563 BACH1O14867 736 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 CTSHP09668 335 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 KRT76Q01546 638 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 MKRN4PQ13434 485 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-221ENST00000472563 FAM160B1Q5W0V3 765 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 PPP2R2DQ66LE6 453 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 ZNF746Q6NUN9 644 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-221ENST00000472563 MIS18BP1Q6P0N0 1132 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 RUFY4Q6ZNE9 571 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 SMAP1Q8IYB5 467 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-221ENST00000472563 MAFAQ8NHW3 353 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-221ENST00000472563 TBCKQ8TEA7 893 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 SEPT8Q92599 483 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 PRDM12Q9H4Q4 367 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 TRPC6Q9Y210 931 aa13.57□□□□□ -0.24
SYNE1-221ENST00000472563 CYP3A7-CYP3A51PA0A087WV96 503 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 POTEB3A0JP26 581 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 MSH4O15457 936 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 CTDNEP1O95476 244 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 CHRNA1P02708 482 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 CA3P07451 260 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 XBP1P17861 261 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 CYP3A7P24462 503 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 NEK4P51957 841 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 IGBP1P78318 339 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 DEFB103AP81534 67 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 SWSAP1Q6NVH7 229 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 POTEBQ6S5H4 581 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 KRT25Q7Z3Z0 450 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 CCDC60Q8IWA6 550 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-221ENST00000472563 ATP8B4Q8TF62 1192 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 WASF1Q92558 559 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 UIMC1Q96RL1 719 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 RIT2Q99578 217 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 PHF20Q9BVI0 1012 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 ZNF302Q9NR11 478 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 PCDHA2Q9Y5H9 948 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 PCDHA10Q9Y5I2 948 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 A0A0C4DFX4 3053 aa13.56□□□□□ -0.24
SYNE1-221ENST00000472563 TLL1O43897 1013 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 HBP1O60381 514 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 GJB5O95377 273 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 PSAPP07602 524 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 MGAT3Q09327 533 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 NONOQ15233 471 aaKnown RBP eCLIP13.55□□□□□ -0.24
SYNE1-221ENST00000472563 ME3Q16798 604 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 Q4G0T1 1027 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 PDXDC2PQ6P474 469 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 MOXD1Q6UVY6 613 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 DNAJB3Q8WWF6 145 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 APBB2Q92870 758 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 SLC5A5Q92911 643 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 GTF3C6Q969F1 213 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 MBOAT7Q96N66 472 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 GAS2L1Q99501 681 aaPredicted RBP13.55□□□□□ -0.24
SYNE1-221ENST00000472563 RAD9AQ99638 391 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 ZBED2Q9BTP6 218 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 OSBPL7Q9BZF2 842 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 ORC3Q9UBD5 711 aaPredicted RBP13.55□□□□□ -0.24
SYNE1-221ENST00000472563 TCEAL9Q9UHQ7 104 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 KCNJ14Q9UNX9 436 aa13.55□□□□□ -0.24
SYNE1-221ENST00000472563 MAFBQ9Y5Q3 323 aaPredicted RBP13.55□□□□□ -0.24
SYNE1-221ENST00000472563 AMHP03971 560 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 FDPSP14324 419 aaKnown RBP13.54□□□□□ -0.24
SYNE1-221ENST00000472563 ATP4AP20648 1035 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 TAP1Q03518 808 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 ADGRE1Q14246 886 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 ZNF484Q5JVG2 852 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 IER5Q5VY09 327 aa13.54□□□□□ -0.24
SYNE1-221ENST00000472563 MTHFD1LQ6UB35 978 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms