RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CCT2P78371 535 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 PPFIA1Q13136 1202 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 IKBKEQ14164 716 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 CEP55Q53EZ4 464 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 RUFY3Q7L099 469 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 FBXL16Q8N461 479 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 HLA-CQ95604 372 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 RAD9AQ99638 391 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 SUGCTQ9HAC7 445 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 ERAP1Q9NZ08 941 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 COG5Q9UP83 839 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 NRCAMQ92823 1304 aa17.93■□□□□ 0.46
CCDC88B-205ENST00000472524 ADAMTS3O15072 1205 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 PRPF3O43395 683 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 EFCAB14O75071 495 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 ADAM17P78536 824 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 PKN1Q16512 942 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 DBF4BQ8NFT6 615 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 CCDC12Q8WUD4 166 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 SLC26A6Q9BXS9 759 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 SMARCAD1Q9H4L7 1026 aa17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 NCOA5Q9HCD5 579 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 AGO4Q9HCK5 861 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-205ENST00000472524 NLRC5Q86WI3 1866 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 ESYT2A0FGR8 921 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 LINC01553A4QN01 128 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 DDX39AO00148 427 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 EPB41L2O43491 1005 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 CAND2O75155 1236 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 PDIA3P30101 505 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 ERVK-21P61565 698 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 IGBP1P78318 339 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 ITGB3BPQ13352 177 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 MKRN4PQ13434 485 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 TOB2Q14106 344 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 GRIK4Q16099 956 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 NTRK3Q16288 839 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 PLEKHG4Q58EX7 1191 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 RUFY4Q6ZNE9 571 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 TGS1Q96RS0 853 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 PCYT2Q99447 389 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 OSBPL7Q9BZF2 842 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 ZMYND12Q9H0C1 365 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 ZSWIM6Q9HCJ5 1215 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 C6orf50Q9HD87 102 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 PPP4R2Q9NY27 417 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 CYP46A1Q9Y6A2 500 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 NFASCO94856 1347 aa17.91■□□□□ 0.46
CCDC88B-205ENST00000472524 MEIS1O00470 390 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 ACTR2P61160 394 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 PLA2G4DQ86XP0 818 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 REXO1Q8N1G1 1221 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 RASGRP4Q8TDF6 673 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 SEPT8Q92599 483 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 UIMC1Q96RL1 719 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 LARP6Q9BRS8 491 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 RNF26Q9BY78 433 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 UPF3BQ9BZI7 483 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 AZI2Q9H6S1 392 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 TUBE1Q9UJT0 475 aa17.9■□□□□ 0.46
CCDC88B-205ENST00000472524 FAM86B1E9PN63 330 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 FAM86B2P0C5J1 330 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 IFNAR1P17181 557 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 GNA11P29992 359 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 MYOCDQ8IZQ8 938 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 C17orf80Q9BSJ5 609 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 LMCD1Q9NZU5 365 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 VPS54Q9P1Q0 977 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 TRPC6Q9Y210 931 aa17.89■□□□□ 0.45
CCDC88B-205ENST00000472524 AMHP03971 560 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 EVCP57679 992 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 TAF2Q6P1X5 1199 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 NIPA1Q7RTP0 329 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 CCDC148Q8NFR7 591 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 ZBTB10Q96DT7 871 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 EPHX3Q9H6B9 360 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 INSL6Q9Y581 213 aa17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 TCF20Q9UGU0 1960 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-205ENST00000472524 CHRNA1P02708 482 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 CYP3A4P08684 503 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 INSRRP14616 1297 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 STAT5BP51692 787 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 STK3Q13188 491 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 PLCB4Q15147 1175 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 FAM26DQ5JW98 314 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 MARCH8Q5T0T0 291 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 MCTP2Q6DN12 878 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 RSPH3Q86UC2 560 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 BICD2Q8TD16 824 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 DNAJB3Q8WWF6 145 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 CRYGNQ8WXF5 182 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 TM6SF1Q9BZW5 370 aa17.87■□□□□ 0.45
CCDC88B-205ENST00000472524 IGLV3-22A0A075B6J6 115 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 MBLAC1A4D2B0 266 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 RRN3P2A6NIE6 340 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 CPLX1O14810 134 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 BACH1O14867 736 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 CCNE2O96020 404 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 GHRP10912 638 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms