RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 TMEM60Q9H2L4 133 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 UVRAGQ9P2Y5 699 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 SLC1A1P43005 524 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 PPANQ9NQ55 473 aaKnown RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 POLR2FP61218 127 aaKnown RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CHRNA2Q15822 529 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 NCAPH2Q6IBW4 605 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 PCGF5Q86SE9 256 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 KLHL7Q8IXQ5 586 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CHURC1Q8WUH1 139 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 PLAAQ9Y263 795 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 DNA2P51530 1060 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 CASP7P55210 303 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 HSPA9P38646 679 aaKnown RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 FMR1Q06787 632 aaKnown RBP eCLIP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 AGGF1Q8N302 714 aaeCLIP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 NEDD1Q8NHV4 660 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 FRMD8P1Q9BZ68 369 aaPredicted RBP7.62□□□□□ -1.19
SYNE1-216ENST00000461872 NDUFB9Q9Y6M9 179 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 MAPK13O15264 365 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 ATF2P15336 505 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 HOMEZQ8IX15 550 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 EMILIN3Q9NT22 766 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 GCNT4Q9P109 453 aa7.62□□□□□ -1.19
SYNE1-216ENST00000461872 LRRC53A6NM62 1247 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 CDH16O75309 829 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TROAPQ12815 778 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 CENPPQ6IPU0 288 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 CYB5R4Q7L1T6 521 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ILDR1Q86SU0 546 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ANGPTL2Q9UKU9 493 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 NFU1Q9UMS0 254 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TMEM232C9JQI7 657 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 BBOX1O75936 387 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MDM2Q00987 491 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TBCCQ15814 346 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 USP38Q8NB14 1042 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 HVCN1Q96D96 273 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 HACD3Q9P035 362 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 GSTA2P09210 222 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 SERPINB4P48594 390 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ARID5AQ03989 594 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MCF2L2Q86YR7 1114 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 FAM178BQ8IXR5 827 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 OGFOD1Q8N543 542 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TTC13Q8NBP0 860 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 JARID2Q92833 1246 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 RPS6KC1Q96S38 1066 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PUS3Q9BZE2 481 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 BAIAP2L1Q9UHR4 511 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 DISP2A7MBM2 1401 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TLDC2A0PJX2 215 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 SPAG6O75602 509 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 KCNK9Q9NPC2 374 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MYH3P11055 1940 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MMEP08473 750 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 KRT15P19012 456 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 RFC4P35249 363 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MRPS25P82663 173 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MRPS35P82673 323 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 SAMD3Q8N6K7 520 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 KLHL29Q96CT2 875 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 UBXN6Q9BZV1 441 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MYH8P13535 1937 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 STAT4Q14765 748 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PARVGQ9HBI0 331 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MTMR7Q9Y216 660 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MRPL11Q9Y3B7 192 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ASAP2O43150 1006 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 STK10O94804 968 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 FXR1P51114 621 aaKnown RBP eCLIP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 RWDD2BP57060 319 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PDXDC2PQ6P474 469 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ZNF34Q8IZ26 560 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PGM2Q96G03 612 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 RBM41Q96IZ5 413 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MAML3Q96JK9 1138 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PAIP2Q9BPZ3 127 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 DCP1AQ9NPI6 582 aaPredicted RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MYH10P35580 1976 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 ENC1O14682 589 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 TEX33O43247 280 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PBX1P40424 430 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 PTGISQ16647 500 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 FAM186BQ8IYM0 893 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 U2AF1L4Q8WU68 220 aaKnown RBP7.61□□□□□ -1.19
SYNE1-216ENST00000461872 OLFM3Q96PB7 478 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 MMS19Q96T76 1030 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 VCPKMTQ9H867 229 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 C1orf112Q9NSG2 853 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 NDE1Q9NXR1 346 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 CTNNAL1Q9UBT7 734 aa7.61□□□□□ -1.19
SYNE1-216ENST00000461872 GCNT3O95395 438 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ATP1A2P50993 1020 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 GUCY2FP51841 1108 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 DDR1Q08345 913 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 CCDC28BQ9BUN5 200 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 ATP6V0A4Q9HBG4 840 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 AIPL1Q9NZN9 384 aa7.6□□□□□ -1.19
SYNE1-216ENST00000461872 MID2Q9UJV3 735 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms