RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 NIPA1Q7RTP0 329 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 CYP2W1Q8TAV3 490 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 APBB2Q92870 758 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 TNPO1Q92973 898 aaKnown RBP15.89■□□□□ 0.13
USP4-206ENST00000461553 PHKBQ93100 1093 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 RAD9AQ99638 391 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 SLC26A6Q9BXS9 759 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 ZMYND12Q9H0C1 365 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 TRPC6Q9Y210 931 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 CYP46A1Q9Y6A2 500 aa15.89■□□□□ 0.13
USP4-206ENST00000461553 LCHNA4D1U4 455 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 ARHGEF15O94989 841 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 RPLP2P05387 115 aaKnown RBP15.88■□□□□ 0.13
USP4-206ENST00000461553 ARP10275 920 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 IGBP1P78318 339 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 ITGB3BPQ13352 177 aaPredicted RBP15.88■□□□□ 0.13
USP4-206ENST00000461553 FAM117BQ6P1L5 589 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 RUFY4Q6ZNE9 571 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 PLA2G4DQ86XP0 818 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 BICD2Q8TD16 824 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 IFIH1Q9BYX4 1025 aaKnown RBP15.88■□□□□ 0.13
USP4-206ENST00000461553 TSPYL2Q9H2G4 693 aaPredicted RBP15.88■□□□□ 0.13
USP4-206ENST00000461553 TCEAL9Q9UHQ7 104 aa15.88■□□□□ 0.13
USP4-206ENST00000461553 MBLAC1A4D2B0 266 aaPredicted RBP15.87■□□□□ 0.13
USP4-206ENST00000461553 EPOPA6NHQ4 379 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 RRN3P2A6NIE6 340 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 DDX39AO00148 427 aaKnown RBP15.87■□□□□ 0.13
USP4-206ENST00000461553 MEIS1O00470 390 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 IFNAR1P17181 557 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 PDIA3P30101 505 aaKnown RBP15.87■□□□□ 0.13
USP4-206ENST00000461553 CCT2P78371 535 aaKnown RBP15.87■□□□□ 0.13
USP4-206ENST00000461553 PKN1Q16512 942 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 TJAP1Q5JTD0 557 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 FAM26DQ5JW98 314 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP4-206ENST00000461553 RPAINQ86UA6 219 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 TRIM22Q8IYM9 498 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 PCYT2Q99447 389 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 NCOA5Q9HCD5 579 aaKnown RBP15.87■□□□□ 0.13
USP4-206ENST00000461553 ZSWIM6Q9HCJ5 1215 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 TTC3P53804 2025 aa15.87■□□□□ 0.13
USP4-206ENST00000461553 FAM86B1E9PN63 330 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 M0QZ92 97 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 RFXAPO00287 272 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 CPLX1O14810 134 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 BACH1O14867 736 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 PPFIA3O75145 1194 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 CYP3A4P08684 503 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 FAM86B2P0C5J1 330 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 GHRP10912 638 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 SLC26A2P50443 739 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 STAT5BP51692 787 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 EVCP57679 992 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 MKRN4PQ13434 485 aaPredicted RBP15.86■□□□□ 0.13
USP4-206ENST00000461553 TOB2Q14106 344 aaPredicted RBP15.86■□□□□ 0.13
USP4-206ENST00000461553 NTRK3Q16288 839 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 FAM160B1Q5W0V3 765 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 PLPPR4Q7Z2D5 763 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 SYMPKQ92797 1274 aaKnown RBP15.86■□□□□ 0.13
USP4-206ENST00000461553 TGS1Q96RS0 853 aaKnown RBP15.86■□□□□ 0.13
USP4-206ENST00000461553 PRDM6Q9NQX0 595 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 PPP4R2Q9NY27 417 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 VPS54Q9P1Q0 977 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 INSL6Q9Y581 213 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 KIAA1671Q9BY89 1806 aa15.86■□□□□ 0.13
USP4-206ENST00000461553 TCF20Q9UGU0 1960 aaKnown RBP15.86■□□□□ 0.13
USP4-206ENST00000461553 IGLV3-22A0A075B6J6 115 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 INSRRP14616 1297 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 MGAT3Q09327 533 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 PLCB4Q15147 1175 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 SKIV2LQ15477 1246 aaKnown RBP15.85■□□□□ 0.13
USP4-206ENST00000461553 CPLX2Q6PUV4 134 aaKnown RBP15.85■□□□□ 0.13
USP4-206ENST00000461553 IL27Q8NEV9 243 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 RASGRP4Q8TDF6 673 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 GDPD5Q8WTR4 605 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 DNAJB3Q8WWF6 145 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 ATXN2LQ8WWM7 1075 aaKnown RBP15.85■□□□□ 0.13
USP4-206ENST00000461553 CRYGNQ8WXF5 182 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 YME1L1Q96TA2 773 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 ZNF577Q9BSK1 485 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 UPF3BQ9BZI7 483 aaKnown RBP15.85■□□□□ 0.13
USP4-206ENST00000461553 TM6SF1Q9BZW5 370 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 FAM49AQ9H0Q0 323 aaPredicted RBP15.85■□□□□ 0.13
USP4-206ENST00000461553 MTUS1Q9ULD2 1270 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 MTCH2Q9Y6C9 303 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 ATG2AQ2TAZ0 1938 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 XIRP2A4UGR9 3374 aa15.85■□□□□ 0.13
USP4-206ENST00000461553 POTEB3A0JP26 581 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 LINC01553A4QN01 128 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 IPO5O00410 1097 aaKnown RBP15.84■□□□□ 0.13
USP4-206ENST00000461553 CHRNA1P02708 482 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 POU3F3P20264 500 aaPredicted RBP15.84■□□□□ 0.13
USP4-206ENST00000461553 MRPS6P82932 125 aaKnown RBP15.84■□□□□ 0.13
USP4-206ENST00000461553 SSRP1Q08945 709 aaKnown RBP15.84■□□□□ 0.13
USP4-206ENST00000461553 GRB10Q13322 594 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 PRR16Q569H4 304 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 MARCH8Q5T0T0 291 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 ERICH6BQ5W0A0 696 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 MIS18BP1Q6P0N0 1132 aa15.84■□□□□ 0.13
USP4-206ENST00000461553 POTEBQ6S5H4 581 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms