RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 VGLL2Q8N8G2 317 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 TBC1D22AQ8WUA7 517 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 ZNF296Q8WUU4 475 aaPredicted RBP9.04□□□□□ -0.96
USP54-208ENST00000461520 TMEM87BQ96K49 555 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 VEZTQ9HBM0 779 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 SEMA3GQ9NS98 782 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 SMC4Q9NTJ3 1288 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 CORINQ9Y5Q5 1042 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 CAPN6Q9Y6Q1 641 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 KIF16BQ96L93 1317 aa9.04□□□□□ -0.96
USP54-208ENST00000461520 H3BS24 57 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 CCER2I3L3R5 266 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 SORBS3O60504 671 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 ZBTB48P10074 688 aaPredicted RBP9.03□□□□□ -0.96
USP54-208ENST00000461520 HDLBPQ00341 1268 aaKnown RBP9.03□□□□□ -0.96
USP54-208ENST00000461520 RASA3Q14644 834 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 C22orf34Q6ZV56 151 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 MRPL41Q8IXM3 137 aaKnown RBP9.03□□□□□ -0.96
USP54-208ENST00000461520 KLHDC4Q8TBB5 520 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 FAM168AQ92567 244 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 VTI1BQ9UEU0 232 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 SSC5DA1L4H1 1573 aa9.03□□□□□ -0.96
USP54-208ENST00000461520 MANSC4A6NHS7 340 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 EYA2O00167 538 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 FRAT2O75474 233 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 PF4P02776 101 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 IFIT1P09914 478 aaKnown RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 FGFR2P21802 821 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 CRKP46108 304 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 RFX5P48382 616 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 TNNI2P48788 182 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 PUM3Q15397 648 aaKnown RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 PKN2Q16513 984 aaKnown RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 NBPF12Q5TAG4 269 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 SLC6A19Q695T7 634 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 ANKRD13AQ8IZ07 590 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 ACSF2Q96CM8 615 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 CRELD1Q96HD1 420 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 MRIQ9BWK5 157 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 TDRD3Q9H7E2 651 aaKnown RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 CARS2Q9HA77 564 aaKnown RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 ZNF70Q9UC06 446 aaPredicted RBP9.02□□□□□ -0.97
USP54-208ENST00000461520 FZD1Q9UP38 647 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 HDAC5Q9UQL6 1122 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 SUGT1Q9Y2Z0 365 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 ST14Q9Y5Y6 855 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 ECM29Q5VYK3 1845 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 AOX1Q06278 1338 aa9.02□□□□□ -0.97
USP54-208ENST00000461520 USP2O75604 605 aaPredicted RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 UBTFL1P0CB47 393 aaPredicted RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 PDE4BQ07343 736 aa9.01□□□□□ -0.97
USP54-208ENST00000461520 CHAF1AQ13111 956 aaPredicted RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 CAMK2GQ13555 558 aaPredicted RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 MCATQ8IVS2 390 aaKnown RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 LPIN2Q92539 896 aa9.01□□□□□ -0.97
USP54-208ENST00000461520 TEKT1Q969V4 418 aa9.01□□□□□ -0.97
USP54-208ENST00000461520 WNK4Q96J92 1243 aa9.01□□□□□ -0.97
USP54-208ENST00000461520 API5Q9BZZ5 524 aaKnown RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 NOB1Q9ULX3 412 aaKnown RBP9.01□□□□□ -0.97
USP54-208ENST00000461520 MAST3O60307 1309 aa9.01□□□□□ -0.97
USP54-208ENST00000461520 ARAP2Q8WZ64 1704 aa9□□□□□ -0.97
USP54-208ENST00000461520 UPK3BL1B0FP48 263 aa9□□□□□ -0.97
USP54-208ENST00000461520 UPK3BL2E5RIL1 263 aa9□□□□□ -0.97
USP54-208ENST00000461520 FKTNO75072 461 aa9□□□□□ -0.97
USP54-208ENST00000461520 SLC5A1P13866 664 aa9□□□□□ -0.97
USP54-208ENST00000461520 ZNF746Q6NUN9 644 aaPredicted RBP9□□□□□ -0.97
USP54-208ENST00000461520 POU5F2Q8N7G0 328 aa9□□□□□ -0.97
USP54-208ENST00000461520 CLMNQ96JQ2 1002 aa9□□□□□ -0.97
USP54-208ENST00000461520 ZDHHC15Q96MV8 337 aa9□□□□□ -0.97
USP54-208ENST00000461520 TEPSINQ96N21 525 aa9□□□□□ -0.97
USP54-208ENST00000461520 LMCD1Q9NZU5 365 aa9□□□□□ -0.97
USP54-208ENST00000461520 FAM221AA4D161 298 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 TCP10L2B9ZVM9 353 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 CILPO75339 1184 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 CIAO1O76071 339 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 F13A1P00488 732 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 PLCG1P19174 1290 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 CYP7A1P22680 504 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 GBP2P32456 591 aaPredicted RBP8.99□□□□□ -0.97
USP54-208ENST00000461520 LMNB2Q03252 620 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 TNK2Q07912 1038 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 FKBP1CQ5VVH2 108 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 OTUD7BQ6GQQ9 843 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 FBXO46Q6PJ61 603 aaPredicted RBP8.99□□□□□ -0.97
USP54-208ENST00000461520 HHIPL2Q6UWX4 724 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 ATG9AQ7Z3C6 839 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 FAM83AQ86UY5 434 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 RELL1Q8IUW5 271 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 WDR66Q8TBY9 1149 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 ARHGAP45Q92619 1136 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 UBE2FQ969M7 185 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 TMEM39BQ9GZU3 492 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 R3HDMLQ9H3Y0 253 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 TMOD2Q9NZR1 351 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 ZSWIM5Q9P217 1185 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 CTNND2Q9UQB3 1225 aa8.99□□□□□ -0.97
USP54-208ENST00000461520 MINDY4BA8MYZ0 360 aa8.98□□□□□ -0.97
USP54-208ENST00000461520 IL15P40933 162 aaPredicted RBP8.98□□□□□ -0.97
USP54-208ENST00000461520 RARSP54136 660 aaKnown RBP8.98□□□□□ -0.97
USP54-208ENST00000461520 APOBEC3HQ6NTF7 200 aaKnown RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms