RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 XRRA1Q6P2D8 792 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 CNKSR3Q6P9H4 555 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 NFXL1Q6ZNB6 911 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 LIAT1Q6ZQX7 453 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 PARP9Q8IXQ6 854 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 ZNF654Q8IZM8 581 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 IGDCC4Q8TDY8 1250 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 DHX38Q92620 1227 aaKnown RBP10.02□□□□□ -0.81
HDAC9-220ENST00000461409 TMEM87BQ96K49 555 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 INPP4AQ96PE3 977 aaPredicted RBP10.02□□□□□ -0.81
HDAC9-220ENST00000461409 LY9Q9HBG7 655 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 TAF6LQ9Y6J9 622 aa10.02□□□□□ -0.81
HDAC9-220ENST00000461409 MYO9BQ13459 2157 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 CCDC69A6NI79 296 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 H3BRB1 525 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 PIK3CDO00329 1044 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 FIBPO43427 364 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 PRC1O43663 620 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 POU3F3P20264 500 aaPredicted RBP10.01□□□□□ -0.81
HDAC9-220ENST00000461409 ICAM3P32942 547 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 WDR5P61964 334 aaKnown RBP10.01□□□□□ -0.81
HDAC9-220ENST00000461409 TAP1Q03518 808 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 IKBKEQ14164 716 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 AAK1Q2M2I8 961 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 METTL7BQ6UX53 244 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 SERINC5Q86VE9 423 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 MICALL1Q8N3F8 863 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 SMARCC2Q8TAQ2 1214 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 PIBF1Q8WXW3 757 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 ASB2Q96Q27 587 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 USP26Q9BXU7 913 aa10.01□□□□□ -0.81
HDAC9-220ENST00000461409 TUT1Q9H6E5 874 aaKnown RBP10.01□□□□□ -0.81
HDAC9-220ENST00000461409 MUC3AQ02505 3323 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 BDP1A6H8Y1 2624 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 C17orf102A2RUQ5 167 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 SPATA31C2B4DYI2 1134 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 SORBS3O60504 671 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 NBNO60934 754 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 CAND2O75155 1236 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 LGALS2P05162 132 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 GNAT1P11488 350 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 THPOP40225 353 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 LIFRP42702 1097 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 MRPS9P82933 396 aaKnown RBP10□□□□□ -0.81
HDAC9-220ENST00000461409 SP2Q02086 613 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 GUCA2AQ02747 115 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 TRIM71Q2Q1W2 868 aaKnown RBP10□□□□□ -0.81
HDAC9-220ENST00000461409 ZNF618Q5T7W0 954 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 PCNX4Q63HM2 1172 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 GIMAP8Q8ND71 665 aaPredicted RBP10□□□□□ -0.81
HDAC9-220ENST00000461409 ARNTL2Q8WYA1 636 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 ATP6V0A1Q93050 837 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 CDHR1Q96JP9 859 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 RAD9AQ99638 391 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 SENP7Q9BQF6 1050 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 C16orf70Q9BSU1 422 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 MYL10Q9BUA6 226 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 PRDM6Q9NQX0 595 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 ZNF215Q9UL58 517 aaPredicted RBP10□□□□□ -0.81
HDAC9-220ENST00000461409 SCN5AQ14524 2016 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 XIRP2A4UGR9 3374 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 GBF1Q92538 1859 aa10□□□□□ -0.81
HDAC9-220ENST00000461409 REV3LO60673 3130 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 TNFRSF10AO00220 468 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SH2B2O14492 632 aaPredicted RBP9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SLC27A2O14975 620 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 LGR5O75473 907 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 GJB5O95377 273 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SMIM10L2AP0DMW4 78 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SMIM10L2BP0DMW5 78 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 HOXC8P31273 242 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 GPNMBQ14956 572 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SKIV2LQ15477 1246 aaKnown RBP9.99□□□□□ -0.81
HDAC9-220ENST00000461409 RNF20Q5VTR2 975 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 CYFIP1Q7L576 1253 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 NLRX1Q86UT6 975 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 ADAMTS19Q8TE59 1207 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 GPKOWQ92917 476 aaPredicted RBP eCLIP9.99□□□□□ -0.81
HDAC9-220ENST00000461409 ESYT1Q9BSJ8 1104 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 LSG1Q9H089 658 aaKnown RBP9.99□□□□□ -0.81
HDAC9-220ENST00000461409 PSTPIP2Q9H939 334 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 ANO2Q9NQ90 1003 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 FCF1Q9Y324 198 aaKnown RBP9.99□□□□□ -0.81
HDAC9-220ENST00000461409 SLC12A7Q9Y666 1083 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 MTCH2Q9Y6C9 303 aa9.99□□□□□ -0.81
HDAC9-220ENST00000461409 RSPH10B2B2RC85 870 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 MEIS2O14770 477 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 PLEKHA8P1O95397 391 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 RSPH10BP0C881 870 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 DEFB103AP81534 67 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 ZNF200P98182 395 aaPredicted RBP9.98□□□□□ -0.81
HDAC9-220ENST00000461409 SEMA3FQ13275 785 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 CREB3L3Q68CJ9 461 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 USP17L6PQ6QN14 398 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 SYNE3Q6ZMZ3 975 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 TRIM67Q6ZTA4 783 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 TEX2Q8IWB9 1127 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 SRBD1Q8N5C6 995 aaKnown RBP9.98□□□□□ -0.81
HDAC9-220ENST00000461409 WNT8BQ93098 351 aa9.98□□□□□ -0.81
HDAC9-220ENST00000461409 GPRASP2Q96D09 838 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms