RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 TBC1D22BQ9NU19 505 aa17.62■□□□□ 0.41
LIMS1-210ENST00000449684 TUBE1Q9UJT0 475 aa17.62■□□□□ 0.41
LIMS1-210ENST00000449684 TLL1O43897 1013 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 WDR5P61964 334 aaKnown RBP17.61■□□□□ 0.41
LIMS1-210ENST00000449684 SCRN1Q12765 414 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 GPNMBQ14956 572 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 MIS18BP1Q6P0N0 1132 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 PLPPR4Q7Z2D5 763 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 TET1Q8NFU7 2136 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 SEPT8Q92599 483 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 PCDHA4Q9UN74 947 aa17.61■□□□□ 0.41
LIMS1-210ENST00000449684 ADAMTS3O15072 1205 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 CA3P07451 260 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 INSRRP14616 1297 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 IGFBP4P22692 258 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 SLC26A2P50443 739 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 MBTPS1Q14703 1052 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 TRAF7Q6Q0C0 670 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 CKAP2LQ8IYA6 745 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 BLIDQ8IZY5 108 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 DBF4BQ8NFT6 615 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 PCYT2Q99447 389 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 SAMM50Q9Y512 469 aa17.6■□□□□ 0.41
LIMS1-210ENST00000449684 COL6A3P12111 3177 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 IGLV3-22A0A075B6J6 115 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 POTEB3A0JP26 581 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 PFKFB2O60825 505 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 AMHP03971 560 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 RPLP2P05387 115 aaKnown RBP17.59■□□□□ 0.41
LIMS1-210ENST00000449684 USP11P51784 963 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 AK2P54819 239 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 ADAM17P78536 824 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 GALNT17Q6IS24 598 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 PDXDC2PQ6P474 469 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 POTEBQ6S5H4 581 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 FAM177A1Q8N128 213 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-210ENST00000449684 TBCKQ8TEA7 893 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 CRYGNQ8WXF5 182 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 ZNF302Q9NR11 478 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 TPCN1Q9ULQ1 816 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 MYO9BQ13459 2157 aa17.59■□□□□ 0.41
LIMS1-210ENST00000449684 GBF1Q92538 1859 aa17.58■□□□□ 0.41
LIMS1-210ENST00000449684 M0QZ92 97 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 ATG7O95352 703 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 CCNE2O96020 404 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 PSAPP07602 524 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 CIITAP33076 1130 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 NEK4P51957 841 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 DEFB103AP81534 67 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 KRT76Q01546 638 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 PLCB4Q15147 1175 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 ZNF746Q6NUN9 644 aaPredicted RBP17.58■□□□□ 0.4
LIMS1-210ENST00000449684 SWSAP1Q6NVH7 229 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 FAM117BQ6P1L5 589 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 ABHD15Q6UXT9 468 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 RUFY4Q6ZNE9 571 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 MYOCDQ8IZQ8 938 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 DNAJB3Q8WWF6 145 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 PPM1EQ8WY54 764 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 WASF1Q92558 559 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 AIFM3Q96NN9 605 aa17.58■□□□□ 0.4
LIMS1-210ENST00000449684 FAM49AQ9H0Q0 323 aaPredicted RBP17.58■□□□□ 0.4
LIMS1-210ENST00000449684 HBP1O60381 514 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 PLEKHG4Q58EX7 1191 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 IER5Q5VY09 327 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 TMCO2Q7Z6W1 182 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-210ENST00000449684 RPAINQ86UA6 219 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 SMAP1Q8IYB5 467 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-210ENST00000449684 APBB2Q92870 758 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 IFIH1Q9BYX4 1025 aaKnown RBP17.57■□□□□ 0.4
LIMS1-210ENST00000449684 CERS4Q9HA82 394 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 KCNJ14Q9UNX9 436 aa17.57■□□□□ 0.4
LIMS1-210ENST00000449684 CCDC194A0A1B0GVG4 234 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 MBLAC1A4D2B0 266 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 DHX15O43143 795 aaKnown RBP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 GHRP10912 638 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 NONOQ15233 471 aaKnown RBP eCLIP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 TCTN1Q2MV58 587 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 FAM26DQ5JW98 314 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 MARCH8Q5T0T0 291 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 TRMT1LQ7Z2T5 733 aaKnown RBP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 KRT25Q7Z3Z0 450 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 CCDC60Q8IWA6 550 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 DAGLBQ8NCG7 672 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 RAD9AQ99638 391 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 ORC3Q9UBD5 711 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-210ENST00000449684 PCDHA10Q9Y5I2 948 aa17.56■□□□□ 0.4
LIMS1-210ENST00000449684 STK36Q9NRP7 1315 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 IGKV6D-21A0A0A0MT36 114 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 WDR64B1ANS9 1081 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 GAS7O60861 476 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 GJB5O95377 273 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 SEC24BO95487 1268 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 LRCH2Q5VUJ6 765 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.55■□□□□ 0.4
LIMS1-210ENST00000449684 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.55■□□□□ 0.4
LIMS1-210ENST00000449684 NECAB1Q8N987 351 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 ATP8B4Q8TF62 1192 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 TRAPPC12Q8WVT3 735 aa17.55■□□□□ 0.4
LIMS1-210ENST00000449684 ARNTL2Q8WYA1 636 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms