RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TDRD3Q9H7E2 651 aaKnown RBP18.56■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF335Q9H4Z2 1342 aaPredicted RBP18.56■□□□□ 0.56
PTPRF-209ENST00000438120 K7ERI5 159 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 PRPSAP2O60256 369 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 TTLL6Q8N841 843 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 SLC10A4Q96EP9 437 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 RUNDC3BQ96NL0 473 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 IFT88Q13099 833 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 C10orf76Q5T2E6 689 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 SLC44A5Q8NCS7 719 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 SPDL1Q96EA4 605 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 GBP5Q96PP8 586 aa18.56■□□□□ 0.56
PTPRF-209ENST00000438120 PDZD8Q8NEN9 1154 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 IFT122Q9HBG6 1241 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 MRPL47Q9HD33 250 aaKnown RBP18.55■□□□□ 0.56
PTPRF-209ENST00000438120 H7C1W4 665 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 GDAP1Q8TB36 358 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 ENOX1Q8TC92 643 aaKnown RBP18.55■□□□□ 0.56
PTPRF-209ENST00000438120 RAVER2Q9HCJ3 691 aaKnown RBP18.55■□□□□ 0.56
PTPRF-209ENST00000438120 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.55■□□□□ 0.56
PTPRF-209ENST00000438120 SERPING1P05155 500 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 LIFRP42702 1097 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 CRKP46108 304 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 LRGUKQ96M69 825 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 MYL3P08590 195 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 VSTM4Q8IW00 320 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 ADAMTS1Q9UHI8 967 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 MAGI3Q5TCQ9 1506 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 GOLGA8CPA6NN73 597 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 FAM160B2Q86V87 743 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 INPP5FQ9Y2H2 1132 aa18.55■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L15C9J2P7 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L13C9JLJ4 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L11C9JVI0 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L18D6R9N7 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L22D6RA61 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L17D6RBQ6 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L19D6RCP7 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L20D6RJB6 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 EPHB4P54760 987 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L24Q0WX57 530 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 IQCB1Q15051 598 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 USP17L6PQ6QN14 398 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 MASTLQ96GX5 879 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 CPSF2Q9P2I0 782 aaKnown RBP18.54■□□□□ 0.56
PTPRF-209ENST00000438120 PCDHA6Q9UN73 950 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 PCDHA8Q9Y5H6 950 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 NDUFA10O95299 355 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 CYP2E1P05181 493 aaPredicted RBP18.54■□□□□ 0.56
PTPRF-209ENST00000438120 ZBED6P86452 979 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 DSTYKQ6XUX3 929 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 CYB5R4Q7L1T6 521 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 OR6B3Q8NGW1 331 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 SLC12A6Q9UHW9 1150 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 IRX4P78413 519 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 THOC5Q13769 683 aaKnown RBP18.54■□□□□ 0.56
PTPRF-209ENST00000438120 KRT31Q15323 416 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 RAB44Q7Z6P3 723 aaPredicted RBP18.54■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF710Q8N1W2 664 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 ADGBQ8N7X0 1667 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 TRIM49BA6NDI0 452 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 CYP27B1O15528 508 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 FOXP4Q8IVH2 680 aaPredicted RBP18.54■□□□□ 0.56
PTPRF-209ENST00000438120 TOM1L1O75674 476 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 STAG1Q8WVM7 1258 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 VCX3AQ9NNX9 186 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 FAN1Q9Y2M0 1017 aa18.54■□□□□ 0.56
PTPRF-209ENST00000438120 SUN1O94901 812 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 BBS9Q3SYG4 887 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 SCYL3Q8IZE3 742 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 ZNF668Q96K58 619 aaPredicted RBP18.53■□□□□ 0.56
PTPRF-209ENST00000438120 EIF3CLB5ME19 914 aaKnown RBP18.53■□□□□ 0.56
PTPRF-209ENST00000438120 FOXD4Q12950 439 aaPredicted RBP18.53■□□□□ 0.56
PTPRF-209ENST00000438120 EIF3CQ99613 913 aaKnown RBP18.53■□□□□ 0.56
PTPRF-209ENST00000438120 TMEM179Q6ZVK1 233 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 PSMD2Q13200 908 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 MB21D1Q8N884 522 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 ANKARQ7Z5J8 1434 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 MYL1P05976 194 aa18.53■□□□□ 0.56
PTPRF-209ENST00000438120 OXER1Q8TDS5 423 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 TMEM260Q9NX78 707 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 ABCB11O95342 1321 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 IGKV5-2P06315 115 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 ARID5BQ14865 1188 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 TMTC3Q6ZXV5 915 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 PASD1Q8IV76 773 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 RTKN2Q8IZC4 609 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 CCDC197Q8NCU1 140 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 RNF139Q8WU17 664 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 TMEM47Q9BQJ4 181 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 PRKAG2Q9UGJ0 569 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 SPATA31E1Q6ZUB1 1445 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 RWDD4Q6NW29 188 aaKnown RBP18.52■□□□□ 0.56
PTPRF-209ENST00000438120 MINPP1Q9UNW1 487 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 JRKLQ9Y4A0 524 aa18.52■□□□□ 0.56
PTPRF-209ENST00000438120 COG7P83436 770 aa18.52■□□□□ 0.55
PTPRF-209ENST00000438120 MTMR1Q13613 665 aa18.52■□□□□ 0.55
PTPRF-209ENST00000438120 PCGF5Q86SE9 256 aa18.52■□□□□ 0.55
PTPRF-209ENST00000438120 ZHX2Q9Y6X8 837 aa18.52■□□□□ 0.55
PTPRF-209ENST00000438120 SMIM24O75264 130 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms