RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PSMA2P25787 234 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 HINFPQ9BQA5 517 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 PIK3C2BO00750 1634 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 C21orf2O43822 256 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 ECE2O60344 883 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TTC4O95801 387 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 SOX5P35711 763 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 TMED2Q15363 201 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 ARMCX2Q7L311 632 aa13.01□□□□□ -0.33
CCDC88A-207ENST00000436346 SMIM24O75264 130 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 GSPT1P15170 499 aaKnown RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 PIM2Q9P1W9 311 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 NLRP10Q86W26 655 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 DHTKD1Q96HY7 919 aaPredicted RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 LMBRD1Q9NUN5 540 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 ZHX2Q9Y6X8 837 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 ZMYM1Q5SVZ6 1142 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 ZWILCHQ9H900 591 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 PRDM5Q9NQX1 630 aaPredicted RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 PPRC1Q5VV67 1664 aaKnown RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 COL15A1P39059 1388 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 HEG1Q9ULI3 1381 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 GOLGA8KD6RF30 607 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 F8W8V4 182 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 UBE2SQ16763 222 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 TTC19Q6DKK2 380 aaPredicted RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 TMTC3Q6ZXV5 915 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 EXT2Q93063 718 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 GNGT2O14610 69 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 SPATA1Q5VX52 437 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 CYP4F22Q6NT55 531 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 BANK1Q8NDB2 785 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 SPZ1Q9BXG8 430 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 YWHAHQ04917 246 aaPredicted RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 MTMR1Q13613 665 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 APOA5Q6Q788 366 aa13□□□□□ -0.33
CCDC88A-207ENST00000436346 BSDC1Q9NW68 430 aaPredicted RBP13□□□□□ -0.33
CCDC88A-207ENST00000436346 JAK3P52333 1124 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CACNB3P54284 484 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 FAM83BQ5T0W9 1011 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 THEM5Q8N1Q8 247 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 SH3RF3Q8TEJ3 882 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CHD2O14647 1828 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 NCAPD2Q15021 1401 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CASP14P31944 242 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 C10orf76Q5T2E6 689 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 PDCD6IPQ8WUM4 868 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 MAML1Q92585 1016 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 MASTLQ96GX5 879 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CDK8P49336 464 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 SLC27A3Q5K4L6 730 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 UHMK1Q8TAS1 419 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 KIAA1210Q9ULL0 1709 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 LRRC41Q15345 812 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 GRAMD1CQ8IYS0 662 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 NEMP1O14524 444 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 ACBD5Q5T8D3 534 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 WRNIP1Q96S55 665 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 RMDN3Q96TC7 470 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CXCR5P32302 372 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 ADD2P35612 726 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF445P59923 1031 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 STX1BP61266 288 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 RBM6P78332 1123 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 RC3H1Q5TC82 1133 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 PRKAB2O43741 272 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 TOM1L1O75674 476 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 GH2P01242 217 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 RECQLP46063 649 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 IL9RQ01113 521 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 HABP4Q5JVS0 413 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 SNRNP48Q6IEG0 339 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 CATSPER4Q7RTX7 472 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 N4BP2L2Q92802 583 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 MAGI2Q86UL8 1455 aa12.99□□□□□ -0.33
CCDC88A-207ENST00000436346 MX2P20592 715 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 FOXD4Q12950 439 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 SKIV2LQ15477 1246 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MYRIPQ8NFW9 859 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MTRQ99707 1265 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 CAPS2Q9BXY5 557 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 IQGAP1P46940 1657 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MMP1P03956 469 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ATP6V1E1P36543 226 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 MRPL47Q9HD33 250 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ARHGAP31Q2M1Z3 1444 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ZBTB7AO95365 584 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 H2AFZP0C0S5 128 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PPARGP37231 505 aaPredicted RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PHKA2P46019 1235 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 CTTNQ14247 550 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 ZNF699Q32M78 642 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 PPP1R2P3Q6NXS1 205 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 H2AFVQ71UI9 128 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 CCHCR1Q8TD31 782 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 DCAF4Q8WV16 495 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 HNRNPCL2B2RXH8 293 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 HNRNPCL1O60812 293 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 DSTYKQ6XUX3 929 aa12.98□□□□□ -0.33
CCDC88A-207ENST00000436346 NUDCD1Q96RS6 583 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms