RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 EPHB4P54760 987 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 SKIDA1Q1XH10 827 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 EDRF1Q3B7T1 1238 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 PPP4R3CPQ6ZMV5 832 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 SRLQ86TD4 932 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 SIAH1Q8IUQ4 282 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 KIAA0825Q8IV33 1275 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 ZC3H3Q8IXZ2 948 aaKnown RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 FAM76AQ8TAV0 307 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 DCAF4Q8WV16 495 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 CRYGNQ8WXF5 182 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 MKL1Q969V6 931 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 BCAS3Q9H6U6 928 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 DBNDD1Q9H9R9 158 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 RSPH14Q9UHP6 348 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 FEZ2Q9UHY8 353 aaPredicted RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 DNM3Q9UQ16 869 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 RRP15Q9Y3B9 282 aaKnown RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 LRRC37AA6NMS7 1700 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 ESYT3A0FGR9 886 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 ZSCAN5CA6NGD5 496 aaPredicted RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 FAM86B1E9PN63 330 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 FAM86B2P0C5J1 330 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 MYBP10242 640 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 HOXD13P35453 343 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 RBM5P52756 815 aaKnown RBP eCLIP12.97□□□□□ -0.33
CD44-209ENST00000433892 CYP4A11Q02928 519 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 PTK2Q05397 1052 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 IKQ13123 557 aaPredicted RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 AP3B2Q13367 1082 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 KNOP1Q1ED39 458 aaKnown RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 SFR1Q86XK3 245 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 DNAAF5Q86Y56 855 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 ARMCX3Q9UH62 379 aaPredicted RBP12.97□□□□□ -0.33
CD44-209ENST00000433892 PCDHGC5Q9Y5F6 944 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 RSPH10B2B2RC85 870 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 F5H6K3 240 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 RSPH10BP0C881 870 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 RPA1P27694 616 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 KLRC3Q07444 240 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 MEI1Q5TIA1 1274 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 EMBQ6PCB8 327 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 C10orf67Q8IYJ2 551 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 LENG9Q96B70 501 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 NYAP2Q9P242 653 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 RNF14Q9UBS8 474 aa12.96□□□□□ -0.33
CD44-209ENST00000433892 GREB1LQ9C091 1923 aaPredicted RBP12.96□□□□□ -0.33
CD44-209ENST00000433892 GRID2IPA4D2P6 1211 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 SPDYE3A6NKU9 549 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 GDF11O95390 407 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 UCHL3P15374 230 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 HOXA13P31271 388 aaPredicted RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 CARSP49589 748 aaKnown RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 GUCY2DQ02846 1103 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 ICA1Q05084 483 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 GLE1Q53GS7 698 aaKnown RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 DCAF17Q5H9S7 520 aaPredicted RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 MOXD1Q6UVY6 613 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 SH3BP5LQ7L8J4 393 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 ZNF571Q7Z3V5 609 aaPredicted RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 IRF2BP2Q7Z5L9 587 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 SYT2Q8N9I0 419 aaPredicted RBP12.96□□□□□ -0.34
CD44-209ENST00000433892 ERMNQ8TAM6 284 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 CYP2W1Q8TAV3 490 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 IFT81Q8WYA0 676 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 ZDHHC15Q96MV8 337 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 SPAG5Q96R06 1193 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 AMNQ9BXJ7 453 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 EPB41L5Q9HCM4 733 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 PI4KBQ9UBF8 816 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 FAM198AQ9UFP1 575 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 NFU1Q9UMS0 254 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 TRAF3IP3Q9Y228 551 aa12.96□□□□□ -0.34
CD44-209ENST00000433892 QSER1Q2KHR3 1735 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 AKAP3O75969 853 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 HEXIM1O94992 359 aaKnown RBP12.95□□□□□ -0.34
CD44-209ENST00000433892 AFPP02771 609 aaKnown RBP12.95□□□□□ -0.34
CD44-209ENST00000433892 EXOC3L4Q17RC7 722 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 Q4G0T1 1027 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 DPY19L2P1Q6NXN4 242 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 FRMD5Q7Z6J6 570 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 FBXO11Q86XK2 927 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 IFT20Q8IY31 132 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 KRT12Q99456 494 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 BHMT2Q9H2M3 363 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 GOLPH3Q9H4A6 298 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 SLC26A4O43511 780 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 FAM153BP0C7A2 387 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 XRCC5P13010 732 aaKnown RBP12.95□□□□□ -0.34
CD44-209ENST00000433892 PON1P27169 355 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 TNFRSF8P28908 595 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 KCNA1Q09470 495 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 PTPROQ16827 1216 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 FAM153CQ494X1 144 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 SLC27A3Q5K4L6 730 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 MEX3CQ5U5Q3 659 aaKnown RBP12.95□□□□□ -0.34
CD44-209ENST00000433892 TCERG1LQ5VWI1 586 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 EPM2AIP1Q7L775 607 aaPredicted RBP12.95□□□□□ -0.34
CD44-209ENST00000433892 CAVIN3Q969G5 261 aa12.95□□□□□ -0.34
CD44-209ENST00000433892 SH3GL2Q99962 352 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms