RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SLC9A2Q9UBY0 812 aa16.6■□□□□ 0.25
SDC1-204ENST00000429035 DDX39AO00148 427 aaKnown RBP16.59■□□□□ 0.25
SDC1-204ENST00000429035 ZBTB43O43298 467 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 MGAT3Q09327 533 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 SGMS1Q86VZ5 419 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 FIBCD1Q8N539 461 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 C1QTNF1Q9BXJ1 281 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 ANO3Q9BYT9 981 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 ADGRA3Q8IWK6 1321 aa16.59■□□□□ 0.25
SDC1-204ENST00000429035 M0QZ92 97 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 MRPS6P82932 125 aaKnown RBP16.58■□□□□ 0.24
SDC1-204ENST00000429035 FGD1P98174 961 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 TMEM62Q0P6H9 643 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 LPIN1Q14693 890 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 TYW1BQ6NUM6 668 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 PPP1R18Q6NYC8 613 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 BANK1Q8NDB2 785 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 IL17RAQ96F46 866 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 MXRA8Q9BRK3 442 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 EPHX3Q9H6B9 360 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 TMEM260Q9NX78 707 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 MYH9P35579 1960 aaKnown RBP16.58■□□□□ 0.24
SDC1-204ENST00000429035 TTC3P53804 2025 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 EVPLQ92817 2033 aa16.58■□□□□ 0.24
SDC1-204ENST00000429035 KLF18A0A0U1RQI7 1052 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 H3BNC9 293 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 H3BQ06 376 aaPredicted RBP16.57■□□□□ 0.24
SDC1-204ENST00000429035 INSRRP14616 1297 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 IL9P15248 144 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 CD52P31358 61 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 SSTR3P32745 418 aaPredicted RBP16.57■□□□□ 0.24
SDC1-204ENST00000429035 ZNF76P36508 570 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 BMP2KLQ5H9B9 411 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 TCEAL5Q5H9L2 206 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 FBXO47Q5MNV8 452 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 TSHZ1Q6ZSZ6 1077 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 CYP2W1Q8TAV3 490 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 TRAPPC12Q8WVT3 735 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 PCYT2Q99447 389 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 RIC8AQ9NPQ8 531 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 KCNH7Q9NS40 1196 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 BRPF3Q9ULD4 1205 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 TRPV2Q9Y5S1 764 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 BDP1A6H8Y1 2624 aa16.57■□□□□ 0.24
SDC1-204ENST00000429035 SMCO2A6NFE2 343 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 RRN3P2A6NIE6 340 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 STXBP3O00186 592 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 MAFGO15525 162 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 ARP10275 920 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 ACTR2P61160 394 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 BTG3Q14201 252 aaPredicted RBP16.56■□□□□ 0.24
SDC1-204ENST00000429035 ADCK5Q3MIX3 580 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 LEXMQ3ZCV2 418 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 MARCH8Q5T0T0 291 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 PTCRAQ6ISU1 281 aaPredicted RBP16.56■□□□□ 0.24
SDC1-204ENST00000429035 RPAINQ86UA6 219 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 UIMC1Q96RL1 719 aa16.56■□□□□ 0.24
SDC1-204ENST00000429035 NSUN3Q9H649 340 aaKnown RBP16.56■□□□□ 0.24
SDC1-204ENST00000429035 V9GY48 417 aaPredicted RBP16.56■□□□□ 0.24
SDC1-204ENST00000429035 MBLAC1A4D2B0 266 aaPredicted RBP16.55■□□□□ 0.24
SDC1-204ENST00000429035 FAM86C2PA6NEL3 165 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 BACH1O14867 736 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 CDC45O75419 566 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 STAT5BP51692 787 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 PLCB4Q15147 1175 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 CENPQQ7L2Z9 268 aaPredicted RBP16.55■□□□□ 0.24
SDC1-204ENST00000429035 DHX32Q7L7V1 743 aaKnown RBP16.55■□□□□ 0.24
SDC1-204ENST00000429035 AGO4Q9HCK5 861 aaKnown RBP16.55■□□□□ 0.24
SDC1-204ENST00000429035 CLDND1Q9NY35 253 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 GINS2Q9Y248 185 aa16.55■□□□□ 0.24
SDC1-204ENST00000429035 NFASCO94856 1347 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 FOSP01100 380 aaPredicted RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 METAP2P50579 478 aaKnown RBP eCLIP16.54■□□□□ 0.24
SDC1-204ENST00000429035 PAK2Q13177 524 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 ITGB3BPQ13352 177 aaPredicted RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 AP3B2Q13367 1082 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 KRT32Q14532 448 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 PAN2Q504Q3 1202 aaKnown RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 CEP55Q53EZ4 464 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 IER5Q5VY09 327 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 JAKMIP3Q5VZ66 844 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 RASEFQ8IZ41 740 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 LINC01599Q8WXQ3 324 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 KHSRPQ92945 711 aaKnown RBP eCLIP16.54■□□□□ 0.24
SDC1-204ENST00000429035 TNPO1Q92973 898 aaKnown RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 C11orf84Q9BUA3 381 aaPredicted RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 AGO3Q9H9G7 860 aaKnown RBP16.54■□□□□ 0.24
SDC1-204ENST00000429035 TCEAL9Q9UHQ7 104 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 RWDD3Q9Y3V2 267 aa16.54■□□□□ 0.24
SDC1-204ENST00000429035 WDR81Q562E7 1941 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 POTEB3A0JP26 581 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 hCG_1984214I3L0E3 225 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 ENPP3O14638 875 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 RPLP2P05387 115 aaKnown RBP16.53■□□□□ 0.24
SDC1-204ENST00000429035 CPA1P15085 419 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 CDC27P30260 824 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 SREBF1P36956 1147 aa16.53■□□□□ 0.24
SDC1-204ENST00000429035 EXOSC10Q01780 885 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms