RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SLIT2O94813 1529 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CDC27P30260 824 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CKAP4Q07065 602 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 AP3B2Q13367 1082 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CYP26C1Q6V0L0 522 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 RSRC2Q7L4I2 434 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 TMTC1Q8IUR5 882 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 ZFPM1Q8IX07 1006 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CHST13Q8NET6 341 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 NELFBQ8WX92 580 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 SYMPKQ92797 1274 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 RTFDC1Q9BY42 306 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 BHMT2Q9H2M3 363 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 FOXN1O15353 648 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 FDPSP14324 419 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 RPS6P62753 249 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 DLK2Q6UY11 383 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 ATRIPQ8WXE1 791 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 PSPC1Q8WXF1 523 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 TMEM110-MUSTN1A8MSY1 372 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 ACTN1P12814 892 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 KCNA4P22459 653 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CASP1P29466 404 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CASP14P31944 242 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 KRT76Q01546 638 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 DSTYKQ6XUX3 929 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 TAX1BP1Q86VP1 789 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 METTL23Q86XA0 190 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 RIOK1Q9BRS2 568 aaKnown RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 SENP6Q9GZR1 1112 aaPredicted RBP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 MROH8Q9H579 483 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 CYP2C19P33261 490 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 NT5C2P49902 561 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 PLCB3Q01970 1234 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 SBK1Q52WX2 424 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 DEFB128Q7Z7B8 93 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 SPATC1LQ9H0A9 340 aa11.63□□□□□ -0.55
TCOF1-204ENST00000427724 BCCIPQ9P287 314 aaKnown RBP eCLIP11.63□□□□□ -0.55
TCOF1-204ENST00000427724 MMP1P03956 469 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 IGFBP4P22692 258 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SPATA1Q5VX52 437 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 E4F1Q66K89 784 aaPredicted RBP11.62□□□□□ -0.55
TCOF1-204ENST00000427724 MICALCLQ6ZW33 695 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 CERS5Q8N5B7 392 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 GOLGA6L7A0A1B0GV03 622 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SOWAHDA6NJG2 315 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 CRY2Q49AN0 593 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 ICE2Q659A1 982 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 KCNV1Q6PIU1 500 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 EPSTI1Q96J88 318 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 PSMB7Q99436 277 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 PANK4Q9NVE7 773 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.62□□□□□ -0.558e-6■■□□□ 13.6
TCOF1-204ENST00000427724 SFI1A8K8P3 1242 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 TACC1O75410 805 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 ARHGAP44Q17R89 818 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 TKFCQ3LXA3 575 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SHC4Q6S5L8 630 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 TNS4Q8IZW8 715 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 FAM76AQ8TAV0 307 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SEPT1Q8WYJ6 367 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 KATNAL1Q9BW62 490 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SLC39A2Q9NP94 309 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 GINM1Q9NU53 330 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 SLC9A2Q9UBY0 812 aa11.62□□□□□ -0.55
TCOF1-204ENST00000427724 MYPNQ86TC9 1320 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GSTTP1A0A1W2PQM5 241 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 CAPN9O14815 690 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GBP2P32456 591 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 PEX3P56589 373 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 FKBP1BP68106 108 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GRM4Q14833 912 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 LONRF2Q1L5Z9 754 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 FAM26FQ5R3K3 315 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 TRIML1Q8N9V2 468 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 HINFPQ9BQA5 517 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 DDX4Q9NQI0 724 aaKnown RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 FEZ2Q9UHY8 353 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 PHLPP2Q6ZVD8 1323 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 SLURP2P0DP57 97 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 YBX3P16989 372 aaKnown RBP eCLIP11.61□□□□□ -0.559e-6■□□□□ 10.4
TCOF1-204ENST00000427724 FGFR2P21802 821 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 JAK3P52333 1124 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 RBL2Q08999 1139 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 TMEM39AQ9NV64 488 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 NXF1Q9UBU9 619 aaKnown RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 HESX1Q9UBX0 185 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 ADAM21Q9UKJ8 722 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GDAQ9Y2T3 454 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 RFX7Q2KHR2 1363 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 DAPK3O43293 454 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GRIK5Q16478 980 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 MAPK6Q16659 721 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 CEP55Q53EZ4 464 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 PCSK9Q8NBP7 692 aaKnown RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 ENGASEQ8NFI3 743 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 DEFB118Q96PH6 123 aa11.61□□□□□ -0.55
TCOF1-204ENST00000427724 GCOM2Q9BZD3 368 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 FOXP1Q9H334 677 aaPredicted RBP11.61□□□□□ -0.55
TCOF1-204ENST00000427724 PCIF1Q9H4Z3 704 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms