RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PDHBP11177 359 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 RPL13P26373 211 aaKnown RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CLK2P49760 499 aaKnown RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 MNAT1P51948 309 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 ACTN3Q08043 901 aaPredicted RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 HLTFQ14527 1009 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CEP85LQ5SZL2 805 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 GPATCH4Q5T3I0 446 aaKnown RBP12.06□□□□□ -0.48
LIMS1-207ENST00000422797 CCDC121Q6ZUS5 278 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SLFN12Q8IYM2 578 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 RASGEF1CQ8N431 466 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 ANKRD13CQ8N6S4 541 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SEC14L1Q92503 715 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 HPS3Q969F9 1004 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 MS4A14Q96JA4 679 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 SPAG5Q96R06 1193 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 TRAF3IP3Q9Y228 551 aa12.06□□□□□ -0.48
LIMS1-207ENST00000422797 A0A087X0T9 212 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 TMCO5BA8MYB1 307 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 KCNK3O14649 394 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 CHUKO15111 745 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 TDP2O95551 362 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 AFPP02771 609 aaKnown RBP12.05□□□□□ -0.48
LIMS1-207ENST00000422797 FAM153BP0C7A2 387 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 CCDC172P0C7W6 258 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 FAM228BP0C875 321 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 FERP16591 822 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 BTDP43251 543 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 ATP1A2P50993 1020 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 IFFO1Q0D2I5 559 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 ADAM9Q13443 819 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 GRAPQ13588 217 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 FAM153CQ494X1 144 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 TBC1D9BQ66K14 1250 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 USP17L2Q6R6M4 530 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 SLFN11Q7Z7L1 901 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 HOOK3Q86VS8 718 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 MAPKAPK5Q8IW41 473 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 SH2D3CQ8N5H7 860 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 LRRC57Q8N9N7 239 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 MARCH10Q8NA82 808 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-207ENST00000422797 GRAPLQ8TC17 118 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-207ENST00000422797 CEP95Q96GE4 821 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 RAB17Q9H0T7 212 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 KCTD10Q9H3F6 313 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 EMILIN3Q9NT22 766 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 SMARCAL1Q9NZC9 954 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 EHD2Q9NZN4 543 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 ARMCX3Q9UH62 379 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-207ENST00000422797 FAM153AQ9UHL3 310 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 PCDHA12Q9UN75 941 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 PCDHA2Q9Y5H9 948 aa12.05□□□□□ -0.48
LIMS1-207ENST00000422797 BAZ2BQ9UIF8 2168 aaKnown RBP12.05□□□□□ -0.48
LIMS1-207ENST00000422797 GAKO14976 1311 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 CYP3A7-CYP3A51PA0A087WV96 503 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 GMNCA6NCL1 334 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 C5orf60A6NFR6 353 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 POTEMA6NI47 508 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 WTIPA6NIX2 430 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-207ENST00000422797 ANKRD65E5RJM6 399 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 PDXKO00764 312 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 TBX3O15119 743 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 ZPR1O75312 459 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 RPS6KA4O75676 772 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 H2AFZP0C0S5 128 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 PLA2G4BP0C869 781 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 CYP3A7P24462 503 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 CTNNA1P35221 906 aaKnown RBP12.04□□□□□ -0.48
LIMS1-207ENST00000422797 HSD17B3P37058 310 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 TNNI2P48788 182 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 GUCY2FP51841 1108 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 KCNH2Q12809 1159 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 BMT2Q1RMZ1 405 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 HERC4Q5GLZ8 1057 aaPredicted RBP12.04□□□□□ -0.48
LIMS1-207ENST00000422797 KCTD16Q68DU8 428 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 H2AFVQ71UI9 128 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 GPBP1Q86WP2 473 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 FAM133AQ8N9E0 248 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 SLC44A5Q8NCS7 719 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 MAGEC3Q8TD91 643 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 KAT2BQ92831 832 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 VTI1AQ96AJ9 217 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 CENPTQ96BT3 561 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 MBOAT7Q96N66 472 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 TMEM260Q9NX78 707 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 MTMR4Q9NYA4 1195 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 ANKIB1Q9P2G1 1089 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 ADAMTS1Q9UHI8 967 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 HDAC9Q9UKV0 1011 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 NENFQ9UMX5 172 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 SAMM50Q9Y512 469 aa12.04□□□□□ -0.48
LIMS1-207ENST00000422797 SBF2Q86WG5 1849 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 IGKV6D-41A0A0C4DH26 115 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 GOLGA6L10A0A0M3HER8 536 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 USP17L5A8MUK1 530 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 E7EVH7 732 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 H0YGN5 161 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 SART1O43290 800 aaKnown RBP12.03□□□□□ -0.48
LIMS1-207ENST00000422797 TRAPPC3O43617 180 aa12.03□□□□□ -0.48
LIMS1-207ENST00000422797 PPP1R12BO60237 982 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms