RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ELF2Q15723 593 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SLC26A7Q8TE54 656 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SYMPKQ92797 1274 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 AK8Q96MA6 479 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 RMDN3Q96TC7 470 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 DESI2Q9BSY9 194 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 YIPF2Q9BWQ6 316 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 UBE2TQ9NPD8 197 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 ASXL1Q8IXJ9 1541 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 hCG_1984214I3L0E3 225 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ALDH1A1P00352 501 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 GH2P01242 217 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 CLCN1P35523 988 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 ATP1A2P50993 1020 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 VCPP55072 806 aaKnown RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 TNFAIP2Q03169 654 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SLMAPQ14BN4 828 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 IMPG1Q17R60 797 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 SPATA1Q5VX52 437 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 GIMAP8Q8ND71 665 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 BEST2Q8NFU1 509 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 CCHCR1Q8TD31 782 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 MORC4Q8TE76 937 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 POLR3CQ9BUI4 534 aaPredicted RBP7.74□□□□□ -1.17
UPF2-203ENST00000397053 JRKLQ9Y4A0 524 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 WDR97A6NE52 1622 aa7.74□□□□□ -1.17
UPF2-203ENST00000397053 EFCAB14O75071 495 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 GPSM2P81274 684 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 RASSF7Q02833 373 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 HSP90AA5PQ58FG0 334 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TRIM68Q6AZZ1 485 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 USP28Q96RU2 1077 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TRIM62Q9BVG3 475 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 UPF3AQ9H1J1 476 aaKnown RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 CLCA2Q9UQC9 943 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 EPN1Q9Y6I3 576 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 CFLARO15519 480 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 CREB3O43889 395 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 ECEL1O95672 775 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 SH3BGRP55822 239 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 GUCY2DQ02846 1103 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TAF1CQ15572 869 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 CDC37Q16543 378 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 ZNF394Q53GI3 561 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 RASIP1Q5U651 963 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 BTBD8Q5XKL5 378 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TOGARAM2Q6ZUX3 1019 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TMEM179Q6ZVK1 233 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 EGFL8Q99944 293 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 INTS9Q9NV88 658 aaKnown RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 STAP1Q9ULZ2 295 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 KBTBD13C9JR72 458 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 E5RI56 91 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 H3BRJ5 948 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 SUN1O94901 812 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 MOCS2O96007 188 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 CMA1P23946 247 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 HOXA13P31271 388 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 PEX3P56589 373 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 DYNLL1P63167 89 aaKnown RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 GNGT1P63211 74 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 PRKCQQ04759 706 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 SPP2Q13103 211 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 USP17L2Q6R6M4 530 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 TRIM59Q8IWR1 403 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 MCPH1Q8NEM0 835 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 SPZ1Q9BXG8 430 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 RNF26Q9BY78 433 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 SEC31BQ9NQW1 1179 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 PCDHA4Q9UN74 947 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 GOLGA8IPA6NC78 632 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 GOLGA8JA6NMD2 632 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 IKBKBO14920 756 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 KCNA1Q09470 495 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 ZNF568Q3ZCX4 644 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 SNRNP48Q6IEG0 339 aaKnown RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 TEX2Q8IWB9 1127 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 MB21D1Q8N884 522 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 CHCHD3Q9NX63 227 aaKnown RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 SCHIP1Q9P0W5 487 aaPredicted RBP7.73□□□□□ -1.17
UPF2-203ENST00000397053 PCDHGB4Q9UN71 923 aa7.73□□□□□ -1.17
UPF2-203ENST00000397053 KCNQ3O43525 872 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 DNAJC6O75061 913 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 E2F6O75461 281 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 SASH1O94885 1247 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 HADHAP40939 763 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 ALCAMQ13740 583 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 NSUN6Q8TEA1 469 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 OTUB1Q96FW1 271 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 CEP19Q96LK0 163 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 MED23Q9ULK4 1368 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 A0A0D9SFI3 127 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 USP17L5A8MUK1 530 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 RASGRF2O14827 1237 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 TRAPPC3O43617 180 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GFPT2O94808 682 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 FCER1AP12319 257 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PLTPP55058 493 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 ZKSCAN8Q15776 578 aaPredicted RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms