RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RPS6KA1Q15418 735 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 PROCA1Q8NCQ7 364 aaPredicted RBP13.93□□□□□ -0.18
SHMT1-205ENST00000395684 DDX4Q9NQI0 724 aaKnown RBP13.93□□□□□ -0.18
SHMT1-205ENST00000395684 GGA1Q9UJY5 639 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 HDAC9Q9UKV0 1011 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 NHSQ6T4R5 1651 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 BTNL10A8MVZ5 291 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 ZBTB5O15062 677 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 CETN3O15182 167 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 KIF4AO95239 1232 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 HSPA9P38646 679 aaKnown RBP13.93□□□□□ -0.18
SHMT1-205ENST00000395684 SLC12A3P55017 1021 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 TNNC1P63316 161 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 EDRF1Q3B7T1 1238 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 SCFD2Q8WU76 684 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 ATP6V1G3Q96LB4 118 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 TAF1DQ9H5J8 278 aaPredicted RBP13.93□□□□□ -0.18
SHMT1-205ENST00000395684 POLLQ9UGP5 575 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 PLAAQ9Y263 795 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 POTEFA5A3E0 1075 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 POTEIP0CG38 1075 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 SLURP2P0DP57 97 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 UCHL3P15374 230 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 ATP2B4P23634 1241 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 RFC4P35249 363 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 HOXD13P35453 343 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 USP11P51784 963 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 PSMC6P62333 389 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 POTEGQ6S5H5 508 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 POTEEQ6S8J3 1075 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 SLF2Q8IX21 1173 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 LRRC57Q8N9N7 239 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 RBM46Q8TBY0 533 aaKnown RBP13.92□□□□□ -0.18
SHMT1-205ENST00000395684 TAF4BQ92750 862 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 ISCUQ9H1K1 167 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 EPN3Q9H201 632 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 KCNMB3Q9NPA1 279 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 NAGPAQ9UK23 515 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 EP400Q96L91 3159 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 MYH7BA7E2Y1 1941 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 KRT18P05783 430 aaKnown RBP13.92□□□□□ -0.18
SHMT1-205ENST00000395684 ZBTB48P10074 688 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-205ENST00000395684 INPP5BP32019 993 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 CEP85LQ5SZL2 805 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 DDX42Q86XP3 938 aaKnown RBP eCLIP13.92□□□□□ -0.18
SHMT1-205ENST00000395684 CERKQ8TCT0 537 aa13.92□□□□□ -0.18
SHMT1-205ENST00000395684 RPGRQ92834 1020 aaKnown RBP13.92□□□□□ -0.18
SHMT1-205ENST00000395684 CES2O00748 559 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 CEP104O60308 925 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 PPP1R37O75864 691 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 PON1P27169 355 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 SEC24CP53992 1094 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 ITGB3BPQ13352 177 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 FBXW10Q5XX13 1052 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 PRR5LQ6MZQ0 368 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 PPP4R3CPQ6ZMV5 832 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 C1orf131Q8NDD1 294 aaKnown RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 SPAG5Q96R06 1193 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 AP1M1Q9BXS5 423 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 DHX36Q9H2U1 1008 aaKnown RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 PLCB1Q9NQ66 1216 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 GIT2Q14161 759 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 HLTFQ14527 1009 aaKnown RBP eCLIP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 C10orf76Q5T2E6 689 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 NAA35Q5VZE5 725 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 ALKBH5Q6P6C2 394 aaKnown RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 B4GALNT4Q76KP1 1039 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 MAATS1Q7Z4T9 603 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 CATSPER3Q86XQ3 398 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 OR2W6PQ8NHA6 318 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 ACTRT1Q8TDG2 376 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 NEUROG2Q9H2A3 272 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 ARMCX3Q9UH62 379 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 SWAP70Q9UH65 585 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 SERPINB13Q9UIV8 391 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 AJAP1Q9UKB5 411 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-205ENST00000395684 TRAF3IP3Q9Y228 551 aa13.91□□□□□ -0.18
SHMT1-205ENST00000395684 F8W031 263 aaPredicted RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 H0YGN5 161 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 MEIS1O00470 390 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 SHMT1P34896 483 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 HSD17B3P37058 310 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 MDH1P40925 334 aaKnown RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 GTF2IP78347 998 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 UAP1Q16222 522 aaPredicted RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 PTGISQ16647 500 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 TRAPPC3LQ5T215 181 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 FAM182BQ5T319 152 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 MMS22LQ6ZRQ5 1243 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 FRMD5Q7Z6J6 570 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 METTL13Q8N6R0 699 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 TBC1D16Q8TBP0 767 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 TBC1D22AQ8WUA7 517 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 PBKQ96KB5 322 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 BCAS3Q9H6U6 928 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 TMBIM4Q9HC24 238 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 NFS1Q9Y697 457 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 PITPNM2Q9BZ72 1349 aa13.9□□□□□ -0.18
SHMT1-205ENST00000395684 HMGB1P1B2RPK0 211 aaPredicted RBP13.9□□□□□ -0.18
SHMT1-205ENST00000395684 SART1O43290 800 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms