RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 IKBKBO14920 756 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 EIF3HO15372 352 aaKnown RBP eCLIP6.2□□□□□ -1.42
RFFL-202ENST00000394597 UBXN2AP68543 259 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ATP2C1P98194 919 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 BEND6Q5SZJ8 279 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 SHC4Q6S5L8 630 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 GRAMD1CQ8IYS0 662 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TRIM58Q8NG06 486 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 COG1Q8WTW3 980 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ANKS1AQ92625 1134 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DDX27Q96GQ7 796 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 SGSM3Q96HU1 749 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ZNF577Q9BSK1 485 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 IRX2Q9BZI1 471 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 TRIM7Q9C029 511 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TMEM39BQ9GZU3 492 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TBC1D7Q9P0N9 293 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DDTLA6NHG4 134 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 STXBP3O00186 592 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 CREB3O43889 395 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 AP1G2O75843 785 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 POTEJP0CG39 1038 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 FDX1P10109 184 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 NR1D1P20393 614 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 OSBPP22059 807 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 RHBDL3P58872 404 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 OTUD6AQ7L8S5 288 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TBC1D1Q86TI0 1168 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 NCAPG2Q86XI2 1143 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 CCDC155Q8N6L0 562 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 HNRNPLLQ8WVV9 542 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 IDI2Q9BXS1 227 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 WDR11Q9BZH6 1224 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 MRPL44Q9H9J2 332 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 IL17RBQ9NRM6 502 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 PANK4Q9NVE7 773 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 HOXC10Q9NYD6 342 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DOT1LQ8TEK3 1739 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ABCB11O95342 1321 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 MARF1Q9Y4F3 1742 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 USP11P51784 963 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 GRM1Q13255 1194 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TRIM14Q14142 442 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 MUM1Q2TAK8 710 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 SH2D4BQ5SQS7 431 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 RBM43Q6ZSC3 357 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 SAMD7Q7Z3H4 446 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DHX40Q8IX18 779 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 GSPT2Q8IYD1 628 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 MYOCDQ8IZQ8 938 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 CERS5Q8N5B7 392 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DISC1Q9NRI5 854 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 KCND1Q9NSA2 647 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 CHCHD3Q9NX63 227 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 FAM184BQ9ULE4 1060 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 L1RE1Q9UN81 338 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 FRMD4BQ9Y2L6 1034 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 CCDC169A6NNP5 214 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 EPB41P11171 864 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 PLCG1P19174 1290 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 LMNB1P20700 586 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 MORC3Q14149 939 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 KRT71Q3SY84 523 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ZFYVE27Q5T4F4 411 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 ANGEL2Q5VTE6 544 aaKnown RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 MAEAQ7L5Y9 396 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 SPDYE1Q8NFV5 336 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 ZMYND12Q9H0C1 365 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 DEFB129Q9H1M3 183 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 JMJD4Q9H9V9 463 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 TAB2Q9NYJ8 693 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 FBXO2Q9UK22 296 aaPredicted RBP6.2□□□□□ -1.42
RFFL-202ENST00000394597 LAMB4A4D0S4 1761 aa6.2□□□□□ -1.42
RFFL-202ENST00000394597 NOP56O00567 594 aaKnown RBP6.19□□□□□ -1.42
RFFL-202ENST00000394597 GCNT3O95395 438 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 EPHB4P54760 987 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 RNASE9P60153 205 aaKnown RBP6.19□□□□□ -1.42
RFFL-202ENST00000394597 TNNC1P63316 161 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 ARHGAP4P98171 946 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 CYP4A11Q02928 519 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 ZNF658Q5TYW1 1059 aaPredicted RBP6.19□□□□□ -1.42
RFFL-202ENST00000394597 NELFCDQ8IXH7 590 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 CCHCR1Q8TD31 782 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 TBC1D5Q92609 795 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 LRRC45Q96CN5 670 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 SLC10A4Q96EP9 437 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 TCHPQ9BT92 498 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 NUP58Q9BVL2 599 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 VCX3BQ9H321 246 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 HAUS4Q9H6D7 363 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 VCPKMTQ9H867 229 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 VCX3AQ9NNX9 186 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 SLC40A1Q9NP59 571 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 SLC39A2Q9NP94 309 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 DDX4Q9NQI0 724 aaKnown RBP6.19□□□□□ -1.42
RFFL-202ENST00000394597 FAM114A2Q9NRY5 505 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 FAM217BQ9NTX9 383 aaPredicted RBP6.19□□□□□ -1.42
RFFL-202ENST00000394597 GINM1Q9NU53 330 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 STIM2Q9P246 746 aa6.19□□□□□ -1.42
RFFL-202ENST00000394597 COL4A3BPQ9Y5P4 624 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms